BAC Information

Click to search

BAC

Clone NameMSMg01-459E04
Chromosome4 (Build37)
Map Location 35,030,333 - 35,030,782
singlet/doubletsinglet
Overlap geneMobkl2b
Upstream geneCnr1, Spaca1, LOC100039220, LOC665361, LOC665367, 2700059D21Rik, Orc3l, Rars2, Slc35a1, 1700003M02Rik, Gm136, 1810030N24Rik, Zfp292, Cga
Downstream geneIfnk, 3110043O21Rik, LOC620559, LOC621227, Lingo2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-459E04.T7 (MSMg01no459_e04.b1)MSMg01-459E04.TJ (MSMg01no459_e04.g1)
ACCAG544897AG544898
length756772
length of high quality
(start - end)
378 (46 - 423)446 (77 - 522)
definitionCHROMAT_FILE: MSMg01no459_e04.b1 PHD_FILE: MSMg01no459_e04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:32:07 2005CHROMAT_FILE: MSMg01no459_e04.g1 PHD_FILE: MSMg01no459_e04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:32:07 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTAGGTTCACTTATATATACTATCATATCTGCAAATAGTGATATT
TTGACTTCTTCCTTTCCAATTTGTATCCCCTTGATCTCCTTTTGTTGTCG
AATTCCTCTGGCTAGGACTTCAAGTACTATATTGAATAGGTAGGGAGAAA
GTGGGCAGCCTTGTCTAGTCCCTGATTTTAGTGGGATTGCTTCCAGCTTC
TCACCATTTACTTTGATGTTGGCTACTGGTTTGCTGTAGATTGCTTTTAT
CATGTTTAGGTATGGGCCTTGAATTCCTGATCTTTCCAAGACTTTTATCA
TGGATGGGTGTTGGATTTTGTCAAATGCTTTCTCAGCATCTAATGAGATG
ATCATGTGGTTTTTGTCTTTGAGTTTGTTTATATAACGGACTACCGTGAT
GAATTCCCTTATTATTACACACTCCTTGCGCTTCCGTAATGAATCTACTT
TAGTCTTTACCTCTGAATGCTTTGCCGCCTTCCCTCCTTTCTCCCACCTC
TTTTCCTCCCCCCATTTTCCTCCTGTTTTTTTTTTTTTCCTCTTTTTTTT
TTATATGTTCGCTGTCTTGTGTTTCCCCGTTTTGCCTTGATACTCGACCA
CCTTCATTCTTTTTTTCCCCTCCGTCTCTTTATGGGCCCCCTCCTTTTTT
TCTCCCCCTTCTCATTTCCCCCCCCGTTACTCCGTCCCCGCGGTTTTTGC
GTCCCN
CGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAATAGCTAGCAATTCAAAGAGACA
GGAAAGGCTGAGTCTGAACCCTTATGTTTTATGGCTAATAGCACAAAACA
AGCCAAAATTTGTATTTCTAATGATCTGCTAGTCGGTCTAGCAGTTACCA
GGGTCAACAGTACAGCCAGCAACTGCAATAGCCTGTGACTGAAAGAAAGG
CAAATACCAGGATCCTTAGTACCCCAGGATATGAACTCCTGTGCGCTTGT
GCTCCAAATAATCTAGGGATTCCTGTGCTGTGATTACAATCTTGAAAGGT
TAATAATACCAACAAGAATCACAATCAATGCAACCTTACATGTCAATTTG
CCAAACGTTAAAAAGCTCACCAGGCTGTGTGGATTTGGAATCTAGCCCTA
AGAAAGCCAAAAAAAGATCCTAATTAACATCTTCCCAATTCTCCCAAGTG
CATGGAATGTATACCACTAGTCCCCAAAACCACAGATAGACTATAAATGA
CCCTCCGACCATTTCAACCATATTTTTTTTTTCTTTTTCAGATATATCAC
CTGACGGACACTACGGACAGTCCTATATGTGTGTTCACCCCACCCTTTCA
CCCTCGGTTGTTATATTTCCTTCTTCTGCGTTAGTTTTTTCTCTTCTTTC
TTTGCGCGCGAGGATCCTCACACTTCCTCTCTTTTCTGCTTTTACTTCCA
CCCTCTTTTACCCTCTTCCTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no459_e04.g1 MSMg01no459_e04.g1 CHROMAT_FILE:
MSMg01no459_e04.g1 PHD_FILE: MSMg01no459_e04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:32:07 2005
         (446 letters)



>mm_chr4_35030133_35030982
          Length = 850

 Score =  828 bits (428), Expect = 0.0
 Identities = 443/450 (98%), Gaps = 4/450 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aatagctagcaattcaaagagacaggaaaggctgagtctgaaccctt----atgttttat 56
           |||||||||||||||||||||||||||||||||||||||||||||||    |||||||||
Sbjct: 201 aatagctagcaattcaaagagacaggaaaggctgagtctgaacccttccttatgttttat 260

                                                                       
Query: 57  ggctaatagcacaaaacaagccaaaatttgtatttctaatgatctgctagtcggtctagc 116
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 261 ggctaatagcacaaaacaagccaaaatttgtatttctaatgttctgctagtcggtctagc 320

                                                                       
Query: 117 agttaccagggtcaacagtacagccagcaactgcaatagcctgtgactgaaagaaaggca 176
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agttaccagggtcaacagtacagccagcaactgcaatagcctgtgactgaaagaaaggca 380

                                                                       
Query: 177 aataccaggatccttagtaccccaggatatgaactcctgtgcgcttgtgctccaaataat 236
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aacaccaggatccttagtaccccaggatatgaactcctgtgcgcttgtgctccaaataat 440

                                                                       
Query: 237 ctagggattcctgtgctgtgattacaatcttgaaaggttaataataccaacaagaatcac 296
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctagggattcctgtactgtgattacaatcttgaaaggttaataataccaacaagaatcac 500

                                                                       
Query: 297 aatcaatgcaaccttacatgtcaatttgccaaacgttaaaaagctcaccaggctgtgtgg 356
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aatcaatgcaaccttacatgtcaatttgccaaacgttaaaaagctcaccaggctgtgtgg 560

                                                                       
Query: 357 atttggaatctagccctaagaaagccaaaaaaagatcctaattaacatcttcccaattct 416
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atttggaatctagccctaagaaagccaaaaaaagatcctaattaacatcttcccaattct 620

                                         
Query: 417 cccaagtgcatggaatgtataccactagtc 446
           ||||||||||||||||||||||||||||||
Sbjct: 621 cccaagtgcatggaatgtataccactagtc 650


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 446
Length of database: 850
Length adjustment: 10
Effective length of query: 436
Effective length of database: 840
Effective search space:   366240
Effective search space used:   366240
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)