BAC Information

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BAC

Clone NameMSMg01-459G18
Chromosome4 (Build37)
Map Location 21,823,843 - 21,824,211
singlet/doubletsinglet
Overlap geneCoq3
Upstream genePrdm13, Ccnc, 2610029I01Rik, Usp45, 4930528A17Rik, 5730406M06Rik
Downstream gene6230409E13Rik, LOC100040379, Fbxl4, Pou3f2, LOC664911, 1700025O08Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-459G18.T7 (MSMg01no459_g18.b1)MSMg01-459G18.TJ (MSMg01no459_g18.g1)
ACCAG545020AG545021
length788860
length of high quality
(start - end)
469 (39 - 507)245 (69 - 313)
definitionCHROMAT_FILE: MSMg01no459_g18.b1 PHD_FILE: MSMg01no459_g18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:32:20 2005CHROMAT_FILE: MSMg01no459_g18.g1 PHD_FILE: MSMg01no459_g18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:32:20 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTA
ACTTACCTAATAGGGTCAAAAATGTTTTCAGTTACATTGTATAAGCAACG
TGGGATTTTAGTATTGTTTCTGTAAGTTAATGGCTTTAAAGATTTTTTTT
AATTTTAATTTTTTAATTTTAAATTATGCTTTAGATTTAAATTATGCTTC
CAGGGTGCCCTTGGAAGCCAAGTGAGGATGTCAGACCCCGTGGAGCTGGA
GTGTTTGTAAGCTGCCTGATGTGGGTGATGGGAACCAAACCCTATTTGAG
CAGCAAGAGGTCTTAACTACTGAACCACCTCTCCACCCTAAAGCTAATAC
TTTTAACTCATGATGAGAAATATTTCTAATTTCCAAAGCAACCCTAAAAT
GTAAAATTTTGAATGTAAATAAAGCAAAAGGGAAGTGAATGCAAATAAGC
GAAGGATGTACTTTTAAGACTTAAAGGGAGTTCCTGGACTGTTACCTAAT
GAATGGCACCCGTAGGTCATTCATAGAATGAAGAGGCGCANACTTTCCGT
ACTCATCCCACCACGTGTGAGCCCGGGGCCTGAAAAGTTTTTGACTCCCC
TGCTGCCACTGTTGTTTGTGAAGAATCGTAAAACCTTCTTCCCTGGGGTC
TTATGTGCGCAAATAACTAACTCCCCTCTATTTCTGTCTTAAATATATTT
CCCTACAAACTTTATCACAAACCTCCCTTTTATTTACATCCTAACCTTTT
TCGGTCCCTTTTTGCAATTCACCATTCTTTTCCCTGCN
ATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXACTATGTAGACCATCTGGCCTAGAACTCATGG
AAATCTGCCTGCCTCTGCCTCCTAGTGTTGGTATTAAAGGCACTTAACAC
CATGAACCAGCTCCTTCAAGTAACAAGGTTCTATGAAGCAGAATAAAGTA
AGGTCAATCCTGAGGAAGGTGGGTTTTATGTGGAATGATTTTAAAGGGTC
TCTCTGACNAGTAGTATTCGACTAGAAAGAAGTAAGGGAGACAGTCATGT
AAAATGTCTGGTTTTTTATAAATGAATTGTGCTGGATAGCTTTATGACAA
GTTAGTTATCTGACCATATAGAACATCACTCCTCTATATTCTTTTTTCCA
TTACTGGCTCGCATCTACCGCCCCTCTTTTATTTTTTGTCTCCCACTCGT
CTGCCCCTGCCCACTGAGCAATCTTTCCACTTCACTTTACTACTGGTTTT
TTTTTTATTCTCTTATGACCCATTCTCCCCCCTATCTCGTTTCTATGTCC
ACCTTCTTATACATCTCCTTCCTTCATTCCCCTGTCTCCTTCTTTATTCA
TTACTTGCATCTCCCTTTGCCTTTTCCTCCGTTTTTTTTTTCGCTCTTTG
TTAACGTTCTCCCACTCCTTTGTCTCTTCCTCCTTCTTTCCATTCTCGTC
TCTCCTTTTTTTCCCCCTTTCCCTTTCACCCTCTCTTTTTTTCTTTCTCT
CCTTCCTCTTCTCTCCATTCTTCCTCTCTATCTTTTCTCCTCCCATTTCT
CTCCCGTCCTCCTGCCTTTCTGTCTTTATACTTCCCTCCCCCTCTTCTCT
CTTATCTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no459_g18.b1 MSMg01no459_g18.b1 CHROMAT_FILE:
MSMg01no459_g18.b1 PHD_FILE: MSMg01no459_g18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:32:20 2005
         (469 letters)



>mm_chr4_21823343_21824211
          Length = 869

 Score =  714 bits (369), Expect = 0.0
 Identities = 369/369 (100%)
 Strand = Plus / Minus

                                                                       
Query: 101 aagattttttttaattttaattttttaattttaaattatgctttagatttaaattatgct 160
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 869 aagattttttttaattttaattttttaattttaaattatgctttagatttaaattatgct 810

                                                                       
Query: 161 tccagggtgcccttggaagccaagtgaggatgtcagaccccgtggagctggagtgtttgt 220
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 809 tccagggtgcccttggaagccaagtgaggatgtcagaccccgtggagctggagtgtttgt 750

                                                                       
Query: 221 aagctgcctgatgtgggtgatgggaaccaaaccctatttgagcagcaagaggtcttaact 280
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 749 aagctgcctgatgtgggtgatgggaaccaaaccctatttgagcagcaagaggtcttaact 690

                                                                       
Query: 281 actgaaccacctctccaccctaaagctaatacttttaactcatgatgagaaatatttcta 340
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 689 actgaaccacctctccaccctaaagctaatacttttaactcatgatgagaaatatttcta 630

                                                                       
Query: 341 atttccaaagcaaccctaaaatgtaaaattttgaatgtaaataaagcaaaagggaagtga 400
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 atttccaaagcaaccctaaaatgtaaaattttgaatgtaaataaagcaaaagggaagtga 570

                                                                       
Query: 401 atgcaaataagcgaaggatgtacttttaagacttaaagggagttcctggactgttaccta 460
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 atgcaaataagcgaaggatgtacttttaagacttaaagggagttcctggactgttaccta 510

                    
Query: 461 atgaatggc 469
           |||||||||
Sbjct: 509 atgaatggc 501


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 469
Length of database: 869
Length adjustment: 10
Effective length of query: 459
Effective length of database: 859
Effective search space:   394281
Effective search space used:   394281
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)