BAC Information

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BAC

Clone NameMSMg01-459J02
Chromosome4 (Build37)
Map Location 13,030,417 - 13,030,875
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC230010, LOC623671, LOC100039958, Rbm12b, 6720467C03Rik, LOC545592, OTTMUSG00000004461
Downstream geneLOC100039988, Runx1t1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-459J02.T7 (MSMg01no459_j02.b1)MSMg01-459J02.TJ (MSMg01no459_j02.g1)
ACCAG545130AG545131
length879742
length of high quality
(start - end)
---457 (76 - 532)
definitionCHROMAT_FILE: MSMg01no459_j02.b1 PHD_FILE: MSMg01no459_j02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:32:32 2005CHROMAT_FILE: MSMg01no459_j02.g1 PHD_FILE: MSMg01no459_j02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:32:32 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCTAATACCTTCACCTTTTTCCACTCCACTCCTTCTTTATTCTATCTATT
TTCCTCCTACCTACTTCCCTTCTCCTATTTTTTCGTGCGCTACATACTCC
TCTTTCTTCTTTTCTAAAATATCCCCCTTCCCCTAACATTTTAGACACCA
GATTATAAGTTAACATAACACATCTAAAATTATATTCTCTTCATAATAGC
ACACTTAACATTTATGAGACCACAATACGACCTCCAACCACTAACTAGCT
TTACATTTCCTCTTCTCTCTCCCCTCTCTTACTCTCTTACCCTTTTTATC
CACACCCCCACCACCCACATACCCCACCATCTTATCCATCTCGTCTCCCT
CCCCACTACCTCATCAAAAAATAAATATCCTCTCTAATAACATCTCCCTC
ACCTCTCCATCATTTACACTTTTCCCCCCCAACACCCATTTTTACTACAC
CACTCCTTCAACTATCCTACATTAACACACAACATCAACACACCCCACTC
CCATCCTCTTAACCTACCCACTAACCACTCCCCTTCACCCTATTTCATTA
TATTCACACTATTAATTACTCTACACTCCAACAATCATTCTCTCTCCACA
CCCAATCAATCGATCTTACCAATCCCCTACCTACCACACTCTAATTTATT
TACTAAAACCCACTACCCACNTACTTACTTTTCCTCTAACCATCTCTTAC
AATACACCACCAACACCCNCTAATACTCCTGCTATCATATCTCCTCTACT
ACATCACATACAATACAATACAACCTTACACACACACCCACACCTTTATA
CCCCACTACCTCTATTACACCTCTTCTACACAACTTACCTACATTTACCC
TATACAAACCACCTTATAAATAAATCAAN
CAATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTGCAGGCAATGTAATTAGCATGGGG
GCACTGTGGAATCTTTACAGAACTGCCAATTAGCACTTAAGAAATAATTT
GCTTCTGGTACAAAGACAAAGTGACAGACAGTGCACTTGAAAAGCCCTAA
CTGCATTTGAGAGTCTTGAGGATATTTCTTTTTTTATTACAAATGAAATA
TTTTCAGGTTCGCAATGCTGGCCATACTAATTTGTATGAATCCAACCCAG
TCAATTGCATATCTTTAGGTGGAATTTAATTAATTAAATAACTAATTCTT
TTTTTTCAAATTATTTTAAAAATCCAATATATTAATGTGTCTTGATTTTC
ACAATATGTATAAGACAGAGTTTACCCTTTTTTTGGTATGTGACTTAGGG
GCTATTTTACTTTGTCCAGGAAGTCCTAAGATTTGAGTCATTCATACTCA
TAACATCCTGATACTCAGTGCAAGATAGAATATGTAAGTGTGGTCAGTTA
CTGTCACCTTTGACCTTCGTGTAACATTGATTCCATTGACTGAAACGCAC
AAATAATGAATGGCAACCCTGCCCCATTATTTTATGTTCTTCACACATGA
GCTGTTAAGTCCTCTGAATAAAGCATCTTTGGATCATTCCTGGTCTTGTC
CGCAGCTACTTTCGTGTTTACTTCCCGCTTCAACAACCACTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no459_j02.g1 MSMg01no459_j02.g1 CHROMAT_FILE:
MSMg01no459_j02.g1 PHD_FILE: MSMg01no459_j02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:32:32 2005
         (457 letters)



>mm_chr4_13030219_13031075
          Length = 857

 Score =  855 bits (442), Expect = 0.0
 Identities = 455/460 (98%), Gaps = 4/460 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgcaggcaatgtaattagcatgggggcactgtggaatctttacagaactgccaattagca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 tgcaggcaatgtaattagcatgggggcactgtggaatctttacagaactgccaattagca 258

                                                                       
Query: 61  cttaagaaataatttgcttctggtacaaagacaaagtgacagacagtgcacttgaaaagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 cttaagaaataatttgcttctggtacaaagacaaagtgacagacagtgcacttgaaaagc 318

                                                                       
Query: 121 cctaactgcatttgagagtcttgaggatatttctttttttattacaaatgaaatattttc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 cctaactgcatttgagagtcttgaggatatttctttttttattacaaatgaaatattttc 378

                                                                       
Query: 181 aggttcgcaatgctggccatactaatttgtatgaatccaacccagtcaattgcatatctt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 aggttcgcaatgctggccatactaatttgtatgaatccaacccagtcaattgcatatctt 438

                                                                       
Query: 241 taggtggaatttaattaattaaataactaattctttttttt--caaattattttaaaaat 298
           |||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||
Sbjct: 439 taggtggaatttaattaattaaataactaattcttttttttttcaaattattttaaaaat 498

                                                                       
Query: 299 ccaatatattaatgtgtcttgattttcacaatatgtataagacagagtttaccctttttt 358
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 ccaatatattaatgtgtcttgattttcacaatatgtataagacagagtttaccctttttt 558

                                                                       
Query: 359 tggtatgtga-cttaggggctattttactttgtccaggaagtcctaagatttgagtcatt 417
           ||||| || | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 tggtacgt-atcttaggggctattttactttgtccaggaagtcctaagatttgagtcatt 617

                                                   
Query: 418 catactcataacatcctgatactcagtgcaagatagaata 457
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 catactcataacatcctgatactcagtgcaagatagaata 657


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 457
Length of database: 857
Length adjustment: 10
Effective length of query: 447
Effective length of database: 847
Effective search space:   378609
Effective search space used:   378609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)