Query= MSMg01no460_n01.b1 MSMg01no460_n01.b1 CHROMAT_FILE:
MSMg01no460_n01.b1 PHD_FILE: MSMg01no460_n01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:34:11 2005
(557 letters)
>mm_chr4_149259668_149260624
Length = 957
Score = 913 bits (472), Expect = 0.0
Identities = 529/548 (96%)
Strand = Plus / Plus
Query: 1 agctctacagggccatttcgatcgaataggctgaccaaggtttcaaacaaaaggatctcc 60
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 201 agctctacagggccatttcgatggaataggctgaccaaggtttcaaacaaaaggatctcc 260
Query: 61 aggtctgtgctggctgttgccagggaacagggaaggaccagtgtgtgcactgtaggtgtg 120
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 261 aggtctgtgctggctgttgccagggcacagggaaggaccagtgtgtgcactgtaggtgtg 320
Query: 121 tctcatctgggcgctgttccttctgctgtccccaggtcccagtctctgaggacctgtgct 180
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tctcatctgggcgctgtcccttctgctgtccccaggtcccagtctctgaggacctgtgct 380
Query: 181 ttatgaagacctatgcgctcaggagtgagagatcagcataggtgtgccaagcccctgggg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttatgaagacctatgcgctcaggagtgagagatcagcataggtgtgccaagcccctgggg 440
Query: 241 agctgtgctcctttcaaagaaggagtgttcggcactgagatctagtccccacgcctctag 300
|||||||| |||||||||||||| ||||||||||||||||||||||||||| | ||||||
Sbjct: 441 agctgtgcccctttcaaagaaggggtgttcggcactgagatctagtccccaagtctctag 500
Query: 301 taatgataataaggcctatcccttgtgcagggcaccgtggtacataccatgttacaatga 360
||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct: 501 taatgataataaggcctatcccttgcgcagggcaccgtggtacataccatgtcacaatga 560
Query: 361 cattcatctttgtagaatctagcccacggttgtttcctcacctccagtcatacacaagag 420
||| ||||||||||||||||||||||| ||||| ||||||||||||||||||| ||||||
Sbjct: 561 catacatctttgtagaatctagcccacagttgtctcctcacctccagtcatacccaagag 620
Query: 421 ccagattgtattcaagaaccatctttgttctctgtaagtctctcactgtgctccacagct 480
||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct: 621 ccagattgtattcaagaaccatctttgttctctccaaatctctcactgtgctccacagct 680
Query: 481 ttcctgtcccacataagaagtcaaatgaaccatgccacacacccagagaagagccagagg 540
|||||||||| ||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ttcctgtcccccatgagaagccaaatgaaccatgccacacacccagagaagagccagagg 740
Query: 541 cttaattc 548
||||||||
Sbjct: 741 cttaattc 748
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 557
Length of database: 957
Length adjustment: 10
Effective length of query: 547
Effective length of database: 947
Effective search space: 518009
Effective search space used: 518009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no460_n01.g1 MSMg01no460_n01.g1 CHROMAT_FILE:
MSMg01no460_n01.g1 PHD_FILE: MSMg01no460_n01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:34:11 2005
(499 letters)
>mm_chr4_149434217_149435119
Length = 903
Score = 930 bits (481), Expect = 0.0
Identities = 496/503 (98%), Gaps = 4/503 (0%)
Strand = Plus / Minus
Query: 1 acacagcaacaggaggcagctgcctgcggctgggagtggcccggcaggtctcgggcctca 60
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 673 acacagcaacaggaggcagctgcccgcggctgggagtggcccggcaggtctcgggcctca 614
Query: 61 ctcagggtgtgcctgtctgcgaggaacactttatgaagcctcaactcaaagccagcacct 120
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 cgcagggtgtgcctgtctgcgaggaacactttatgaagcctcaactcaaagccagcacct 554
Query: 121 tcgctcagctaccccaagaggaaccaactgacacgccaggcctcgttccaggagccggtc 180
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 553 tcgctcagctaccccaagaggaaccgactgacacgccaggcctcgttccaggagccggtc 494
Query: 181 ctccacacggggtcagtaccctgggcaggctccagtagtccacctaggattctgacccct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 ctccacacggggtcagtaccctgggcaggctccagtagtccacctaggattctgacccct 434
Query: 241 ctgttcacatagtcgggcttctgtctttcccccacaccaggccttggatagaaggcct-- 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 ctgttcacatagtcgggcttctgtctttcccccacaccaggccttggatagaaggcctaa 374
Query: 299 --aaaaaaatcccacaaacacaaccaacttccctggctcttacatcatccaccagaccct 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 aaaaaaaaatcccacaaacacaaccaacttccctggctcttacatcatccaccagaccct 314
Query: 357 ggggctggagcccaaaccagcaagacgctggctggctgcagaaaacctcagggcaaggtg 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 ggggctggagcccaaaccagcaagacgctggctggctgcagaaaacctcagggcaaggtg 254
Query: 417 cagtgctgcaggctcgtaatgggctaagaaagcacttaccaggctaggctaaagtgtgtg 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 cagtgctgcaggctcgtaatgggctaagaaagcacttaccaggctaggctaaagtgtgtg 194
Query: 477 tgtgtgtgtgtgtgtgtgtgtgt 499
|||||||||||||||||||||||
Sbjct: 193 tgtgtgtgtgtgtgtgtgtgtgt 171
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 44
Number of extensions: 9
Number of successful extensions: 8
Number of sequences better than 10.0: 1
Number of HSP's gapped: 6
Number of HSP's successfully gapped: 1
Length of query: 499
Length of database: 903
Length adjustment: 10
Effective length of query: 489
Effective length of database: 893
Effective search space: 436677
Effective search space used: 436677
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
