Query= MSMg01no460_p12.b1 MSMg01no460_p12.b1 CHROMAT_FILE:
MSMg01no460_p12.b1 PHD_FILE: MSMg01no460_p12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:34:23 2005
(446 letters)
>mm_chr4_126763511_126764356
Length = 846
Score = 824 bits (426), Expect = 0.0
Identities = 438/442 (99%), Gaps = 3/442 (0%)
Strand = Plus / Plus
Query: 7 attcactt-tttcgccacctgaattgattgaaataaaatcagacaatggtttgtacgttt 65
|||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 attcacttattt-gccacctgaattgattgaaataaaatcagacaatggtttgtacgttt 265
Query: 66 gtaataacttatatattacttacaataaaaatttaggtagcaaatttaaaaagttgagca 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 gtaataacttatatattacttacaataaaaatttaggtagcaaatttaaaaagttgagca 325
Query: 126 taaggtgtaaataaggggaagtgtgacgagggaaacacctgacattgacctctgtcatct 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 taaggtgtaaataaggggaagtgtgacgagggaaacacctgacattgacctctgtcatct 385
Query: 186 acatgcactgcccatgttcactcccacacatccactacacaaacatacagagaagtagta 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 acatgcactgcccatgttcactcccacacatccactacacaaacatacagagaagtagta 445
Query: 246 gtcaagatttgagtagctacatattctcatatgtcaagatgacttttgaaaaa-aatata 304
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 446 gtcaagatttgagtagctacatattctcatatgtcaagatgacttttgaaaaataatata 505
Query: 305 actgcaaatgtttttaaattttgaaagatggactttgtaaagattgtatctgttctaata 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 actgcaaatgtttttaaattttgaaagatggactttgtaaagattgtatctgttctaata 565
Query: 365 attctgatttttgaggtatttgtgaaggaggctatgattaggatgtatcagagatgtatg 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 attctgatttttgaggtatttgtgaaggaggctatgattaggatgtatcagagatgtatg 625
Query: 425 tgacagagttagatgtttagtt 446
||||||||| ||||||||||||
Sbjct: 626 tgacagagtcagatgtttagtt 647
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 446
Length of database: 846
Length adjustment: 10
Effective length of query: 436
Effective length of database: 836
Effective search space: 364496
Effective search space used: 364496
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no460_p12.g1 MSMg01no460_p12.g1 CHROMAT_FILE:
MSMg01no460_p12.g1 PHD_FILE: MSMg01no460_p12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:34:23 2005
(507 letters)
>mm_chr4_126940323_126941229
Length = 907
Score = 917 bits (474), Expect = 0.0
Identities = 498/506 (98%)
Strand = Plus / Minus
Query: 2 tcctggcctctgacagtcagctcctctgccttcagccaacccccgcccaagtccagtcag 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 707 tcctggcctctgacagtcagctcctctgccttcagccaacccccgcccaagtccagtcag 648
Query: 62 agcaaaaggacctatttttaaagattctcacaacctcagccttcctcagtttcaccagcc 121
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 647 agcaaaacgacctatttttaaagattctcacaacctcagccttcctcagtttcaccagcc 588
Query: 122 acaccccgtctttccaggatctcagggcttttactgctgggaaaggcttctcaggactcc 181
||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct: 587 acaccccgtctttccaggatctcggggcttttactgctgggaaaggcgtctcaggactcc 528
Query: 182 tcgagtacctccgtggccctctaaacacatttcctggtcggagctggtcactctgctctg 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 tcgagtacctccgtggccctctaaacacatttcctggtcggagctggtcactctgctctg 468
Query: 242 aacgataaccttcctgggctcacaaaggagtcacaatgcaaccttatcttctcagagtgg 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 aacgataaccttcctgggctcacaaaggagtcacaatgcaaccttatcttctcagagtgg 408
Query: 302 agacccttcaattccttcagtttcctctaggttgtgaaaagcaagacaaaaaactgagaa 361
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 agacccttcaattccttcagtttcctctaggttgtgaaaagcaagacaaaaaactgagag 348
Query: 362 agcatggagtcttcctttatctccttgctccaggcaggctggggaaaggttttcccaggg 421
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 347 agcatggagtcttcctttatctccttgctccaggcaggctagggaaaggttttcccaggg 288
Query: 422 ttgttaatccccactgcacccagcctcccagcagaggcaaaaggcaaaagatcaagaacc 481
||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||
Sbjct: 287 ttgttaatccccactgcactcagcctcccagcagaggcaaaaggcaaaagaccaagaacc 228
Query: 482 gactaacagaagagcagcaagagaga 507
||||||||||||||||| ||||||||
Sbjct: 227 gactaacagaagagcagtaagagaga 202
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 507
Length of database: 907
Length adjustment: 10
Effective length of query: 497
Effective length of database: 897
Effective search space: 445809
Effective search space used: 445809
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
