BAC Information

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BAC

Clone NameMSMg01-461A20
Chromosome4 (Build37)
Map Location 51,065,861 - 51,254,080
singlet/doubletdoublet
Overlap geneLOC666681
Upstream geneLOC100040979
Downstream geneLOC100040814, LOC384015, LOC100041026
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-461A20.T7 (MSMg01no461_a20.b1)MSMg01-461A20.TJ (MSMg01no461_a20.g1)
ACCAG546265AG546266
length759853
length of high quality
(start - end)		481 (70 - 550)143 (74 - 216)
definitionCHROMAT_FILE: MSMg01no461_a20.b1 PHD_FILE: MSMg01no461_a20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:34:30 2005CHROMAT_FILE: MSMg01no461_a20.g1 PHD_FILE: MSMg01no461_a20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:34:30 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(51,065,861 - 51,066,341)(51,253,938 - 51,254,080)
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CCACACAAATTACAAAAGCAATATCTTTCACTGTACCCTCATATATGTAT
ATATCTTGGAATAACTCTGACAAAGCAAGTAAAAACTCATGTAAGATTTC
TTGGATGGGTGGGATGGTGAGCATCTGTGAGGAGATGAAGGAAAGGAAAT
TCATGATCAGAATATATTATATGAAAATTATGTTTAATAAAAAGGTAGAT
GATGAAAACACAGTGTTGTATCATTTCTGTTGTGTTTTATAGTGTTTTAC
TTTTTCTGTGCTACTGAAGGTATTATAGTTCTGCTATTTCCTCTCTTGCA
GCAAAAACTGTTCTTCAATTACGCCAACTTTTCACCAGAGGATGCCCAAT
TCCATGTATGAGTGCAATCTGCTACATTTCGGATTATATTTCTTGTATCT
TATAATATTAGTTAAGTCCTTAATTAGTGTCAACACTATGATATGTTAAT
ATAAAATTATACTAAGATTCCTCAAAGAGAGTATTTATGCTTATTTCATG
GTCTTATGAATTGGATTTTAGTAATAATGATAATGAAAATGTCATATAAT
CAAATCTTATCCTTTTCTAAGTATACATTTTTTCAGTACTGTGTTCATTG
TACAGAATACCAACCAGCCAACTTAAGGAAAATTAATTAATTATCTTAAA
CCAGTGACCTTCTTTGGCAGGCCTTTGAAACAAATTTTTCTTGAAAATTT
TTTAACCCG

TGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAGGACAATAGATTCCAGGCCTAGCAGT
TGTGTCATCTGGCTGATTTTAAAATATTAAGATTGTCTGTTGTTTTTCGT
TTTCAATAATTAAGGTGGGCAAGAGAGAGGGCATAACAGTGGGATGGTTC
TTGGCGGGTGGTTTAGTCAGCCAACCATGGGAGCTGGGTGAGCAAAAACT
GTGAGAGTTAGACATGGGAGCTGAGAGAGATGGTGTGGTCATTGGCAGCT
TGCTGTAATTAGCTGCGATTTGTTGAAAGAGCTCTGTTGTAGCGCTTTAG
AAGGTAATATGCTTGCTTTTTAATGTTATCTGTTGTATTCTTTTTCTCTT
CTTTTTTTTTTTTTCTTTCCCCCCCTCCCTTCCTTTCCTTTCTTTTCTTT
CCTTCCTTCCCTATCTTCCCTTCCTTTCCATCCCTTCCCCACCCTTTTTT
CCCTCTCCCACCACTTTTTACCTATCCCTCTTTTTTTTTCGCCCCTTTCT
TTCTCTCGATCTTATTCCTCCCTTTTTGTTTTGTTCCCCATTTATTTCTT
TCTTCTTTCCTTCCTTCCATTTTTCCCCCTTTTTATCCTTTTTCCTCTCT
TTTTAATTTTATCCCTTCTTTCTTTAACTCACCTATATACCTTTGCTTTT
TCCATTAAACTGTTAATTATTCTCCTCCTATCCCTTCCCTGTTTCATATT
TTCATTGTGTTATAATTTCTTTCTTACTTCTCAGATTCGTTTCCACTCTC
TTTTTTTTCATTCTCTTCTTTTCTGCTTCCTCTCTTATTTTTTCCCCTGC
ACG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no461_a20.b1 MSMg01no461_a20.b1 CHROMAT_FILE:
MSMg01no461_a20.b1 PHD_FILE: MSMg01no461_a20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:34:30 2005
         (481 letters)



>mm_chr4_51065661_51066541
          Length = 881

 Score =  891 bits (461), Expect = 0.0
 Identities = 476/481 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aatatctttcactgtaccctcatatatgtatatatcttggaataactctgacaaagcaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aatatctttcactgtaccctcatatatgtatatatcttggaataactctgacaaagcaag 260

                                                                       
Query: 61  taaaaactcatgtaagatttcttggatgggtgggatggtgagcatctgtgaggagatgaa 120
           ||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||
Sbjct: 261 taaaaactcatgtaagacttcttggatgggtgggatggtgagcatctgtgagtagatgaa 320

                                                                       
Query: 121 ggaaaggaaattcatgatcagaatatattatatgaaaattatgtttaataaaaaggtaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggaaaggaaattcatgatcagaatatattatatgaaaattatgtttaataaaaaggtaga 380

                                                                       
Query: 181 tgatgaaaacacagtgttgtatcatttctgttgtgttttatagtgttttactttttctgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgatgaaaacacagtgttgtatcatttctgttgtgttttatagtgttttactttttctgt 440

                                                                       
Query: 241 gctactgaaggtattatagttctgctatttcctctcttgcagcaaaaactgttcttcaat 300
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gctactgaaggtattgtagttctgctatttcctctcttgcagcaaaaactgttcttcaat 500

                                                                       
Query: 301 tacgccaacttttcaccagaggatgcccaattccatgtatgagtgcaatctgctacattt 360
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 501 tacgccaacttttcaccagaggatgtccaattccatgtatgagtgcaatctgctacattt 560

                                                                       
Query: 361 cggattatatttcttgtatcttataatattagttaagtccttaattagtgtcaacactat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cggattatatttcttgtatcttataatattagttaagtccttaattagtgtcaacactat 620

                                                                       
Query: 421 gatatgttaatataaaattatactaagattcctcaaagagagtatttatgcttatttcat 480
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gatatgttaatattaaattatactaagattcctcaaagagagtatttatgcttatttcat 680

            
Query: 481 g 481
           |
Sbjct: 681 g 681


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 481
Length of database: 881
Length adjustment: 10
Effective length of query: 471
Effective length of database: 871
Effective search space:   410241
Effective search space used:   410241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no461_a20.g1 MSMg01no461_a20.g1 CHROMAT_FILE:
MSMg01no461_a20.g1 PHD_FILE: MSMg01no461_a20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:34:30 2005
         (143 letters)



>mm_chr4_51253738_51254280
          Length = 543

 Score =  277 bits (143), Expect = 3e-79
 Identities = 143/143 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   aggacaatagattccaggcctagcagttgtgtcatctggctgattttaaaatattaagat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 aggacaatagattccaggcctagcagttgtgtcatctggctgattttaaaatattaagat 284

                                                                       
Query: 61  tgtctgttgtttttcgttttcaataattaaggtgggcaagagagagggcataacagtggg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 tgtctgttgtttttcgttttcaataattaaggtgggcaagagagagggcataacagtggg 224

                                  
Query: 121 atggttcttggcgggtggtttag 143
           |||||||||||||||||||||||
Sbjct: 223 atggttcttggcgggtggtttag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 143
Length of database: 543
Length adjustment: 8
Effective length of query: 135
Effective length of database: 535
Effective search space:    72225
Effective search space used:    72225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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