Query= MSMg01no461_b15.b1 MSMg01no461_b15.b1 CHROMAT_FILE:
MSMg01no461_b15.b1 PHD_FILE: MSMg01no461_b15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:34:34 2005
(488 letters)
>mm_chr4_131422046_131422932
Length = 887
Score = 847 bits (438), Expect = 0.0
Identities = 461/474 (97%), Gaps = 11/474 (2%)
Strand = Plus / Minus
Query: 20 cacacacacaccataaaacaaaacaaaacaaacaaacaaaaaccccactgccatgctggc 79
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 507 cacacacacaccataaaacaaaacaaaacaaacaaac-aaaaccccactgccatgctggc 449
Query: 80 ttcccagttgtcttcaaggcaggagtgtgaacttgttaggtcttttgtaatccagtcaga 139
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 448 ttcccagttgtcttcaaggcaggagtgtgaacttgttaggtcttttgtaatccagttaga 389
Query: 140 acctgctctctcagtccaagaccagacttgatcctccaggtgtcagaatctgccctgtgt 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 acctgctctctcagtccaagaccagacttgatcctccaggtgtcagaatctgccctgtgt 329
Query: 200 agtggtgggttccactctctttaaaagtttagtttgggtgtaggacttctaagtgtatat 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 agtggtgggttccactctctttaaaagtttagtttgggtgtaggacttctaagtgtatat 269
Query: 260 atgtgtaggtgag-----attttttattgattgaggtgtcttccctcaatcatgtttctt 314
||||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct: 268 atgtgtaggtgagaccaca-----tattgattgaggtgtcttccctcaatcatgtttctt 214
Query: 315 atttatagacaagatcttaccatgtagtcctgagtggcctggaactctatagatcatgga 374
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 213 atttatagacaagattttaccatgtagtcctgagtggcctggaactctatagatcatgga 154
Query: 375 gctctgcctgcctctgcctatcaagtgctgcagttaaaggtgcacaccaccattctcagg 434
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153 gctctgcctgcctctgcctatcaagtgctgcagttaaaggtgcacaccaccattctcagg 94
Query: 435 acccctttattttttgagatagtctctcactgaacatgatgctcttttatttgg 488
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 93 acccctttattttttgagatagtctctcactgaacatgatgctcttttatttgg 40
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 488
Length of database: 887
Length adjustment: 10
Effective length of query: 478
Effective length of database: 877
Effective search space: 419206
Effective search space used: 419206
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no461_b15.g1 MSMg01no461_b15.g1 CHROMAT_FILE:
MSMg01no461_b15.g1 PHD_FILE: MSMg01no461_b15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:34:34 2005
(381 letters)
>mm_chr4_131213903_131214683
Length = 781
Score = 698 bits (361), Expect = 0.0
Identities = 376/381 (98%)
Strand = Plus / Plus
Query: 1 tcagttgacaaaggatgtttgtacaacatacatgactgtgtccaagaatgaaaataggca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcagttgacaaaggatgtttgtacaacatacatgactgtgtccaagaatgaaaataggca 260
Query: 61 ccaagcccaggttgtctgaatttgaatccccagcctaccactggcaaagttatgtaatct 120
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 261 ccaagcccaggttgtctgaatttgaatccccagcctaccactggctaagttatgtaatct 320
Query: 121 tagtcatctttctccctcccttcgccaatctcaggtcaagtcagatgagtgtttgcagag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tagtcatctttctccctcccttcgccaatctcaggtcaagtcagatgagtgtttgcagag 380
Query: 181 gactacaccaaagagtgtggacagagagcttttagaaagtgagttatggctatcattgtc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gactacaccaaagagtgtggacagagagcttttagaaagtgagttatggctatcattgtc 440
Query: 241 tctttatagctctgtaaaacatggggattcttggatcccatcactggtctctataattaa 300
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tctagatagctctgtaaaacatggggattcttggatcccatcactggtctctataattaa 500
Query: 301 accatttgttttattaatattattaggcttttttttttttactgcgatagtgtgttttat 360
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 501 accatttgttttattaatattattaggcttttttttttttactgtgatagtgtgttttat 560
Query: 361 agtacttagccaattatttaa 381
||||||||| |||||||||||
Sbjct: 561 agtacttagtcaattatttaa 581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 381
Length of database: 781
Length adjustment: 9
Effective length of query: 372
Effective length of database: 772
Effective search space: 287184
Effective search space used: 287184
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|