BAC Information

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BAC

Clone NameMSMg01-461B15
Chromosome4 (Build37)
Map Location 131,214,103 - 131,422,552
singlet/doubletdoublet
Overlap geneLOC100039799, Ptpru, Mecr
Upstream genePum1, LOC622577, Sdc3, Laptm5, Matn1, LOC622681, LOC100041575, Gm831, EG664832
Downstream geneSfrs4, EG664865, EG623230, Epb4.1, LOC666480, LOC100039835, Oprd1, LOC664894, Ythdf2, LOC664903, Gmeb1, Rnu11, Taf12, 9530096D07Rik, LOC100039864, Trspap1, Rcc1, Snhg3, Phactr4, Med18, Sesn2, Atpif1, Dnajc8, Ptafr, Eya3, Xkr8, Smpdl3b, Rpa2, BC013712, LOC100039917, Ppp1r8, Stx12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-461B15.T7 (MSMg01no461_b15.b1)MSMg01-461B15.TJ (MSMg01no461_b15.g1)
ACCAG546303AG546304
length758783
length of high quality
(start - end)
488 (44 - 531)381 (73 - 453)
definitionCHROMAT_FILE: MSMg01no461_b15.b1 PHD_FILE: MSMg01no461_b15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:34:34 2005CHROMAT_FILE: MSMg01no461_b15.g1 PHD_FILE: MSMg01no461_b15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:34:34 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(131,422,085 - 131,422,552)(131,214,103 - 131,214,483)
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTAGGATTTTCACACACACACCATAAAACAAAACAAAACAAACAAACA
AAAACCCCACTGCCATGCTGGCTTCCCAGTTGTCTTCAAGGCAGGAGTGT
GAACTTGTTAGGTCTTTTGTAATCCAGTCAGAACCTGCTCTCTCAGTCCA
AGACCAGACTTGATCCTCCAGGTGTCAGAATCTGCCCTGTGTAGTGGTGG
GTTCCACTCTCTTTAAAAGTTTAGTTTGGGTGTAGGACTTCTAAGTGTAT
ATATGTGTAGGTGAGATTTTTTATTGATTGAGGTGTCTTCCCTCAATCAT
GTTTCTTATTTATAGACAAGATCTTACCATGTAGTCCTGAGTGGCCTGGA
ACTCTATAGATCATGGAGCTCTGCCTGCCTCTGCCTATCAAGTGCTGCAG
TTAAAGGTGCACACCACCATTCTCAGGACCCCTTTATTTTTTGAGATAGT
CTCTCACTGAACATGATGCTCTTTTATTTGGCTATATGCTGTGCTACTCT
AACTTTCCTCCTCTCCTCTCTGTAGTCCTGGTGTACAGGCTTTTTATGTG
GATACTGGGGATCTGAACTCAAGTTCTAAACTTGGTGGTGCAGTCTTAAA
CTAGTTTCCCCCAGTCCCTTACCCTTCATTCTCTCTATAAGTTTTTTCTT
CTTAAAACACCTTATAATTTTTCTTTTTTCCCTTTATTCCCTTTCCTTGT
ATTCTTTT
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTCAGTTGACAAAGGATGTTTGTACAACA
TACATGACTGTGTCCAAGAATGAAAATAGGCACCAAGCCCAGGTTGTCTG
AATTTGAATCCCCAGCCTACCACTGGCAAAGTTATGTAATCTTAGTCATC
TTTCTCCCTCCCTTCGCCAATCTCAGGTCAAGTCAGATGAGTGTTTGCAG
AGGACTACACCAAAGAGTGTGGACAGAGAGCTTTTAGAAAGTGAGTTATG
GCTATCATTGTCTCTTTATAGCTCTGTAAAACATGGGGATTCTTGGATCC
CATCACTGGTCTCTATAATTAAACCATTTGTTTTATTAATATTATTAGGC
TTTTTTTTTTTTACTGCGATAGTGTGTTTTATAGTACTTAGCCAATTATT
TAAAATATAACAAAGTGAAGATATCACGCTAAGTGGCGTTTGCACCCCAT
AACTACGTCGTCGCGTGCTGTAATTACACCCGCGTCTGTGATCTATTGAT
AATGCAAATGTTACTTGACTCATACCTTCCGCCTGTTTTCCCCCCTTTCT
ATTTTTACGTTTCCTTTTCTCTATTTGTTTCCCTCTTCTTTCCCCCTTTT
TCTTTTTTCTTTTCACTCCCTCTTCTTTTTTCTTATCTCCCACCGCCCTT
TTATATCTCTCACTCATCTTTTCGTTTCCCTCCTTTTCACCTCTTTTTTC
ACTTTCGATCTCTCCCCTTTTTTTATCCCCTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no461_b15.b1 MSMg01no461_b15.b1 CHROMAT_FILE:
MSMg01no461_b15.b1 PHD_FILE: MSMg01no461_b15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:34:34 2005
         (488 letters)



>mm_chr4_131422046_131422932
          Length = 887

 Score =  847 bits (438), Expect = 0.0
 Identities = 461/474 (97%), Gaps = 11/474 (2%)
 Strand = Plus / Minus

                                                                       
Query: 20  cacacacacaccataaaacaaaacaaaacaaacaaacaaaaaccccactgccatgctggc 79
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 507 cacacacacaccataaaacaaaacaaaacaaacaaac-aaaaccccactgccatgctggc 449

                                                                       
Query: 80  ttcccagttgtcttcaaggcaggagtgtgaacttgttaggtcttttgtaatccagtcaga 139
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 448 ttcccagttgtcttcaaggcaggagtgtgaacttgttaggtcttttgtaatccagttaga 389

                                                                       
Query: 140 acctgctctctcagtccaagaccagacttgatcctccaggtgtcagaatctgccctgtgt 199
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 acctgctctctcagtccaagaccagacttgatcctccaggtgtcagaatctgccctgtgt 329

                                                                       
Query: 200 agtggtgggttccactctctttaaaagtttagtttgggtgtaggacttctaagtgtatat 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 agtggtgggttccactctctttaaaagtttagtttgggtgtaggacttctaagtgtatat 269

                                                                       
Query: 260 atgtgtaggtgag-----attttttattgattgaggtgtcttccctcaatcatgtttctt 314
           |||||||||||||     |     ||||||||||||||||||||||||||||||||||||
Sbjct: 268 atgtgtaggtgagaccaca-----tattgattgaggtgtcttccctcaatcatgtttctt 214

                                                                       
Query: 315 atttatagacaagatcttaccatgtagtcctgagtggcctggaactctatagatcatgga 374
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 213 atttatagacaagattttaccatgtagtcctgagtggcctggaactctatagatcatgga 154

                                                                       
Query: 375 gctctgcctgcctctgcctatcaagtgctgcagttaaaggtgcacaccaccattctcagg 434
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153 gctctgcctgcctctgcctatcaagtgctgcagttaaaggtgcacaccaccattctcagg 94

                                                                 
Query: 435 acccctttattttttgagatagtctctcactgaacatgatgctcttttatttgg 488
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 93  acccctttattttttgagatagtctctcactgaacatgatgctcttttatttgg 40


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 488
Length of database: 887
Length adjustment: 10
Effective length of query: 478
Effective length of database: 877
Effective search space:   419206
Effective search space used:   419206
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no461_b15.g1 MSMg01no461_b15.g1 CHROMAT_FILE:
MSMg01no461_b15.g1 PHD_FILE: MSMg01no461_b15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:34:34 2005
         (381 letters)



>mm_chr4_131213903_131214683
          Length = 781

 Score =  698 bits (361), Expect = 0.0
 Identities = 376/381 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcagttgacaaaggatgtttgtacaacatacatgactgtgtccaagaatgaaaataggca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcagttgacaaaggatgtttgtacaacatacatgactgtgtccaagaatgaaaataggca 260

                                                                       
Query: 61  ccaagcccaggttgtctgaatttgaatccccagcctaccactggcaaagttatgtaatct 120
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 261 ccaagcccaggttgtctgaatttgaatccccagcctaccactggctaagttatgtaatct 320

                                                                       
Query: 121 tagtcatctttctccctcccttcgccaatctcaggtcaagtcagatgagtgtttgcagag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tagtcatctttctccctcccttcgccaatctcaggtcaagtcagatgagtgtttgcagag 380

                                                                       
Query: 181 gactacaccaaagagtgtggacagagagcttttagaaagtgagttatggctatcattgtc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gactacaccaaagagtgtggacagagagcttttagaaagtgagttatggctatcattgtc 440

                                                                       
Query: 241 tctttatagctctgtaaaacatggggattcttggatcccatcactggtctctataattaa 300
           |||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tctagatagctctgtaaaacatggggattcttggatcccatcactggtctctataattaa 500

                                                                       
Query: 301 accatttgttttattaatattattaggcttttttttttttactgcgatagtgtgttttat 360
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 501 accatttgttttattaatattattaggcttttttttttttactgtgatagtgtgttttat 560

                                
Query: 361 agtacttagccaattatttaa 381
           ||||||||| |||||||||||
Sbjct: 561 agtacttagtcaattatttaa 581


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 381
Length of database: 781
Length adjustment: 9
Effective length of query: 372
Effective length of database: 772
Effective search space:   287184
Effective search space used:   287184
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)