BAC Information

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BAC

Clone NameMSMg01-461D15
Chromosome4 (Build37)
Map Location 86,473,048 - 86,473,232
singlet/doubletsinglet
Overlap geneDennd4c
Upstream geneLOC668052, Adamtsl1, 4930500O09Rik, Rraga, 6230416J20Rik, LOC100040388, Adfp, EG624685
Downstream geneRps6, Asah3l, Slc24a2, Mllt3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-461D15.T7 (MSMg01no461_d15.b1)MSMg01-461D15.TJ (MSMg01no461_d15.g1)
ACCAG546399AG546400
length769811
length of high quality
(start - end)
184 (132 - 315)74 (69 - 142)
definitionCHROMAT_FILE: MSMg01no461_d15.b1 PHD_FILE: MSMg01no461_d15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:34:44 2005CHROMAT_FILE: MSMg01no461_d15.g1 PHD_FILE: MSMg01no461_d15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:34:45 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGCAGACAAGCCGCGGA
ATTCTATAGTTTTTCCGTAATATGATTCCAGATTGCTAAAGCTCTCAGGT
GTCAAGTCAGGCAAAATAAAACTGACAAAGAAAGTAAAGAGGCTGAAGAT
AAACTGGCTGAGTAGGCATCTTGCAGGAAGCTTCTAGGAAAAGTGCTAAG
TGACCAAACAGTACAGGGCTATGACAAGAAGCAGACTTTCATCTGTGTGG
TCCTAAGGCCTTTCTTTGCACATGCTAGGCTAGCTTTAAACCATCTCCCG
CATTCTTACTTAGCCTTTTGTTTTAAAGAGCGTTACGAGATCAATCCACA
CAACACAGATTACCTTTAAAAGCGTTCATCTAAGGCCTGGGGTTTGATTT
ACTTGGTAGAGTGCCAGCCTCTCATAGAAGGCCCTTGGGTTTTCCCTCCA
TGAGTGTGTGTTGTGCATGGGGGTAGGGATGCCTAGCCCCCTTTGTAACT
TTTTTTCTCCCCACTTCCCTCCTTTTCCTATTCTTTTCTTCTCTTGTACT
TTTCTTCTCCATTTCTTCCTTCTCCCTTTTTTCATATCCTCTATTCCACC
CTCCTTTAACACTTATCCTCTATTTCATTGCCCTTCACTTTATTATTCCA
TCTACCTTTTTTTTTAATTCATCCTGGAATTTCAGTCACCCTTCTTCTGC
AACTCTTCGCTACTCTTCTTCTATTACTCCTCTTTACCCCTCTCCCTCTC
CTTCGCTCTCCTCTCTTTT
CATGCTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXTTTTCAGGAATTCAGCAGTCCCACCTGGGTTTACAGCAGATAG
TGGATAGATAGATAGATCGCATAGATAGATAGATAGATAGATAGATAGAT
ATGGCTGCTGAGATCCGCCTCCGAACACATTGTCCTCTGACCTCTACACA
CATGTCCATGGCATGTGCATACTCACGTACACACTCAAAATATATATTTT
TTTAAATGTATAGGACCGTACCACCCGAATTCGAGGTCATAGGCACACCA
TGAAGGCTCTCTTTCGTGGATCCGGCGCTTGCCTCCCCCCCCCTCCTTCT
CCTTTCCTCTCTCCTTCTTATTCCGCCCCTCCCCCCCCCTCCCCCTTCTC
TTCCTCTTGTCTTTCCCCCCCCCCCCCTTTTTTCTCTCTCTTTTTCCCTT
CTCCCCCGCTCCACTTTGTTTCTCCCTCCTCCCTCTCCTTCCCTTCCCTT
CCCCTCCTCCTTCTCTTCTCCTTTCCCCCCTCCTCCTCTCCTCTCTTTCT
TTTCCTTTTTCCCCCCCTTCTCCCCCTCTCTCCTCCCCTTTTTTTTCCTT
CCCTTCTTCCCTTGCTGCTCTTTTCTCCCCGCCATCCTTTCCTTCCCCCT
TTCCCCTCCCCCCTCCTTTCCCCCTCTTCCTCCCTCTTTTTTTTTTTTCT
TTTCCCCCCCCTTTTTCTTCTTTTCCTCCCCCCCTCCTTTTCTCCTTTTC
CCCCTTTTCCTTCCCCCTTTCCCCCCCTCTCTCCCTTTCCTTCCTCCCTT
CTTTTTCCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no461_d15.b1 MSMg01no461_d15.b1 CHROMAT_FILE:
MSMg01no461_d15.b1 PHD_FILE: MSMg01no461_d15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:34:44 2005
         (184 letters)



>mm_chr4_86472848_86473432
          Length = 585

 Score =  321 bits (166), Expect = 2e-92
 Identities = 181/186 (97%), Gaps = 3/186 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   aagtaaagaggctgaagataaactggctgagt-aggcatcttgcaggaagcttctaggaa 59
           |||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||
Sbjct: 201 aagtaaagaggctgaagataaactggctgagtaaggcttcttgcaggaagcttctaggaa 260

                                                                       
Query: 60  aagtgctaagtgaccaaacagtacagggctatgacaagaagc-agactttcatctgtgtg 118
           ||||||||||||||||||||||||||| |||||||||||||| | |||||||||||||||
Sbjct: 261 aagtgctaagtgaccaaacagtacaggactatgacaagaagcca-actttcatctgtgtg 319

                                                                       
Query: 119 gtcctaaggcctttctttgcacatgctaggctagctttaaaccatctcccgcattcttac 178
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 gtcctaaggcctttctttgcacatgctaggctagctttaaaccatctcccgcattcttac 379

                 
Query: 179 ttagcc 184
           ||||||
Sbjct: 380 ttagcc 385


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 184
Length of database: 585
Length adjustment: 8
Effective length of query: 176
Effective length of database: 577
Effective search space:   101552
Effective search space used:   101552
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)