BAC Information

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BAC

Clone NameMSMg01-463C16
Chromosome4 (Build37)
Map Location 154,378,304 - 154,582,389
singlet/doubletdoublet
Overlap genePlch2, Pex10, Rer1, Morn1, Ski
Upstream geneBC046331, Lrrc47, 1190007F08Rik, Ccdc27, Trp73, Wdr8, 1200015A19Rik, Megf6, Arhgef16, Prdm16, LOC100043342, LOC100042178, Actrt2, B230396O12Rik, Mmel1, 2810405K02Rik, Tnfrsf14, Hes5, Pank4, LOC100043358
Downstream gene2610002J02Rik, Prkcz, Gabrd, 2010015L04Rik, Tmem52, Gnb1, Nadk, A530082C11Rik, Cdc2l1, Mmp23, Mib2, B930041F14Rik, Ssu72, EG381582, Atad3a, Vwa1, A230069A22Rik, E230028L10Rik, Mrpl20, Ccnl2, Aurkaip1, Mxra8, Dvl1, Tas1r3, BC002216, Cpsf3l, Pusl1, Centb5, Ube2j2, C1qdc2, B3galt6, Sdf4, LOC100043436, Tnfrsf4, Tnfrsf18, Ttll10, 9430015G10Rik, EG667357, Agrn, LOC100038882, AW011738
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-463C16.T7 (MSMg01no463_c16.b1)MSMg01-463C16.TJ (MSMg01no463_c16.g1)
ACCAG547882AG547883
length736728
length of high quality
(start - end)
241 (84 - 324)243 (83 - 325)
definitionCHROMAT_FILE: MSMg01no463_c16.b1 PHD_FILE: MSMg01no463_c16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:37:27 2005CHROMAT_FILE: MSMg01no463_c16.g1 PHD_FILE: MSMg01no463_c16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:37:27 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(154,378,304 - 154,378,544)(154,582,152 - 154,582,389)
sequence
ACGCGTCCCAATAATTGCGGCCGCAAAANGAANNCCAANATGCGACACGA
GGCGNGGAATTCTAAATGTTACCAAAAACAGAGACTATCTACAGCTGGCA
CCAAATCTGTCACACCAAAGTTGTAGGGCCTCACGGAGGATCTGCAATTG
GGCACTCATATTAACCCACTGGCTTCTTTCTCCCTGGCCATCCGTGGGCT
GACCCCCTAGTGTCCCCAGGGAAGACAGGAAGAGAGCCAGAATGGGAGCC
CAGGTGGCAAGGGAAATGCCACCAAGCCCCCTGGCGAGTTAAGCTCTGAT
TAGCCCAAGGGTTCTCTTGGGTCATTTTATCCTGAGGACCAGTGTGCTAA
CCAGCCCCACATTCCAATCGTATCTTAGACTTAATGAAATTATGTTAAAG
CCGCTGCATCTGCTACGCAGGTCTCTGCTCTAATTACACAGTTCCAGATC
ACCCTGATACTGATGGTCAGAGTGTGCCGAGCCTTGCAGAAGGCCACATT
TCCATCCTGGGGATCCAAGTGCCTATGGAGGTCACTGTGAGGTCTTACCC
TATATCGACTCTTCATGGGCTGAGAGATCAGGCTTTTACGTCCTGTCTAC
TCCGTTACGACCACTCGAACCGTGTCAAGACCCACGTCTCCAGGACACAA
CTCCCTCAACTTTCCTGACACTACCAATCTGTAAGTTCCATTCACATCTT
ACACCTGGCTACCTCCATGCTAAACATTCCTATCCN
NTTCCTACTATGCAGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTTCAAGAATATCCGAGGCAACCCTGATGCCTA
GAGCTGGGCCTAGTAAGGAGCCTTTGACCTGTAGCTGCAGGCCAGGTGGC
TCTTTCTGTTTGGCTTTAAGAAAAGGGAGGGTTGGTAGACTTTCAAGCCA
GCACTTTTTCTCTGGCCCTGCCGGTGATTGGCCCACGGTGAAGTGAAAGT
CATTTCTTGCTGTTGTGGGCCGAGGTTCTCACCTTCTACTTTCCTGTGAG
TAGTAGCTCAGCTGAGTTTTTGTGTTTTTGGTTTAGNGTCATTTTCTTGG
AGTTTAGAGCGAGGCAGATCTGTGTAGTGGTTAGAGGTGTGAAATCCAAA
GGCATGACTGGCTTGGGCCACTCTGTGACCTTGGGTCATGCATTTCTGAA
TGGAGGCACTAGAATACCCTGTGAACAGACAGGGAGGCAGCATTCATTGT
CTCATGCAGCACCTTGAAGACTTGTAGTGCTTTTGGCCCTCCTTTGAGAG
AGCCAGCTGTATTCTGTGAGCAGTCTCAGAAGTCTCAGCGTGCTGCCCCA
AGTGTTACAGCCTGAGTCTAATGGACATGAGCCATTGTCAGTGACGATTC
TGAGGCACTATTTGATTTCTCTTCAGACCTCCCCTGAAAGTTACCAGTCC
CATAATTCCTTTTCTCTGTCCGCTTGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no463_c16.b1 MSMg01no463_c16.b1 CHROMAT_FILE:
MSMg01no463_c16.b1 PHD_FILE: MSMg01no463_c16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:37:27 2005
         (241 letters)



>mm_chr4_154378104_154378744
          Length = 641

 Score =  458 bits (237), Expect = e-133
 Identities = 240/241 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   actatctacagctggcaccaaatctgtcacaccaaagttgtagggcctcacggaggatct 60
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actatctacaactggcaccaaatctgtcacaccaaagttgtagggcctcacggaggatct 260

                                                                       
Query: 61  gcaattgggcactcatattaacccactggcttctttctccctggccatccgtgggctgac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcaattgggcactcatattaacccactggcttctttctccctggccatccgtgggctgac 320

                                                                       
Query: 121 cccctagtgtccccagggaagacaggaagagagccagaatgggagcccaggtggcaaggg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cccctagtgtccccagggaagacaggaagagagccagaatgggagcccaggtggcaaggg 380

                                                                       
Query: 181 aaatgccaccaagccccctggcgagttaagctctgattagcccaagggttctcttgggtc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaatgccaccaagccccctggcgagttaagctctgattagcccaagggttctcttgggtc 440

            
Query: 241 a 241
           |
Sbjct: 441 a 441


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 241
Length of database: 641
Length adjustment: 9
Effective length of query: 232
Effective length of database: 632
Effective search space:   146624
Effective search space used:   146624
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no463_c16.g1 MSMg01no463_c16.g1 CHROMAT_FILE:
MSMg01no463_c16.g1 PHD_FILE: MSMg01no463_c16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:37:27 2005
         (243 letters)



>mm_chr4_154581952_154582594
          Length = 643

 Score =  429 bits (222), Expect = e-125
 Identities = 234/238 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aggcaaccctgatgcctagagctgggcctagtaaggagcctttgacctgtagctgcaggc 60
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| 
Sbjct: 438 aggcaaccctgatgcctagagctgggcctagtaagtagcctttgacctgtagctgcaggg 379

                                                                       
Query: 61  caggtggctctttctgtttggctttaagaaaagggagggttggtagactttcaagccagc 120
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 aaggtggctctttctgtttggctttaagaaaagggagggttggtagactttcaagccagc 319

                                                                       
Query: 121 actttttctctggccctgccggtgattggcccacggtgaagtgaaagtcatttcttgctg 180
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 318 actttttctctggccctgccggtgattggcccatggtgaagtgaaagtcatttcttgctg 259

                                                                     
Query: 181 ttgtgggccgaggttctcaccttctactttcctgtgagtagtagctcagctgagtttt 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 ttgtgggccgaggttctcaccttctactttcctgtgagtagtagctcagctgagtttt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 243
Length of database: 643
Length adjustment: 9
Effective length of query: 234
Effective length of database: 634
Effective search space:   148356
Effective search space used:   148356
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)