BAC Information

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BAC

Clone NameMSMg01-463I21
Chromosome4 (Build37)
Map Location 132,864,543 - 132,865,148
singlet/doubletsinglet
Overlap geneWdtc1
Upstream geneLOC100039864, Trspap1, Rcc1, Snhg3, Phactr4, Med18, Sesn2, Atpif1, Dnajc8, Ptafr, Eya3, Xkr8, Smpdl3b, Rpa2, BC013712, LOC100039917, Ppp1r8, Stx12, OTTMUSG00000010099, BC008163, Fgr, Ahdc1, LOC100041932, Wasf2, Gpr3, Cd164l2, Fcnc-ps, Map3k6, Sytl1, D4Ertd196e, LOC100041990, LOC100042018
Downstream geneSlc9a1, 4732473B16Rik, 2300002D11Rik, 1810019J16Rik, Nudc, Nr0b2, Gpatch3, Atpbd1b, Sfn, Zdhhc18, LOC545683, Pigv, Arid1a, Rps6ka1, 4930429E23Rik, LOC100042151, Hmgn2, Dhdds, Lin28, Aim1l, Cd52, Ubxd5, Sh3bgrl3, Ccdc21, EG665186, Catsper4, Cnksr1, Zfp593, Grrp1, Pdik1l
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-463I21.T7 (MSMg01no463_i21.b1)MSMg01-463I21.TJ (MSMg01no463_i21.g1)
ACCAG548180AG548181
length770741
length of high quality
(start - end)
115 (135 - 249)606 (85 - 690)
definitionCHROMAT_FILE: MSMg01no463_i21.b1 PHD_FILE: MSMg01no463_i21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:38:00 2005CHROMAT_FILE: MSMg01no463_i21.g1 PHD_FILE: MSMg01no463_i21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:38:00 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNAAACCCTTGTTCTCATGTCACCNNNNNNNNNNNATGTTCCAAAACCCG
CGGNAATCNCNGNAGATAGCATGACCTCTAAGTCNGANCTGNCTCCCAGT
GCTGGGATTAAAGTTGCGTTTTCCCCCGCCCAGCCAACACTTACAGTTCT
TAGACCAAAGTTTGGTTTCCTACACCTGCATAGTGGCTTACAACTTCCTG
TAACTCCAGTTTCACAGGATCTGGCACCCTCATCTGTCCTCTGTGGGCAA
TCACTTTCACACATGTGCATACTAACTAACAAAAACACGCATTTATGCAC
ATAGGAATAAATATAAGAATTATTTTGTTTTAATAGAACGAGCTGCAGCC
TTGGCTGGCTTAATTGATACCCCCCCCATCTCAGTGGTGACGAACACAAC
GATGAGATCATGGATACGCCAATGTTAGGCTGGTACTACTACTGTATTTG
ACACCCATCCTTGTACAACCATGATGCATCGTTCATCAATATTTATCTGA
AGTTTCTTTGGCTGATCCTACCTGAATAGAAGACCGTAGTCTTTATACAA
ATATTAAAATAACGATCCCATATACTCCCAACATTCTTACCTCGACTTCA
CCCTGGATCTCATCCTTTTCAGCTTTTCGTTCGCTACCCCTCATATTCTC
ACTCCTTTTTCTCACCATATAGTTACTATCTAGTCACTCATATTTATATA
TCCCTCGTATCTCACTTGCAATACTCGATTGATGCGGTAGTGATACATCA
TAGGCCTTTCAATCTCCTCT
TTTTTACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTGCCGCAATTCTTAGTAAGGGATAGCGAG
AATTATCATCCACTCAGTTCCTATCTGGAGAGGAGTCAGAAAAAAGGGCT
CCTTAGGCAGCGCAGCTCGGCGTGCATGGTGACCACTCCGACTGCACGAA
GTGCAGATCCTGACTGAACTTCTGTGCTGATCGGCTGCTGCTCGATAGCC
AGGCTCACTTTGGTGAGCTCTTACAAACTTAGTGATACGAGAGGGAGAAG
GCGCGCTGACACCCAGGCCATTCTCCTTCAGTATTTTTTTCTCTCCTATC
TCCTGCCAATCATTTGATCTCTTGTGAGCAGTTCCTGCCTCATGCTGGAG
ACCGCATTTTGATCACGGGGGCAGCTGACTCCAAGGTGCACGTCCACGAC
CTTACGGTAAAGGAGACGATCCACATGTTTGGAGACCACACAAACCGGGT
GAAGCGCATTGCCACGGCGCCCATGTGGCCTAACACGTTCTGGAGCGCCG
CAGAGGATGGGCTTATCCGGTAAGGATCTCTGCATGAAATTACTGTATGT
GCTCCGCTTCAGTGGCTCTGCTGCAATGCTTCCTTCCACCTGGTCTTTCC
CCCAGCAGACAGGAAGTGGGTCTCCTCCCTGTTCCAGTGTCCTGTGTGTT
TGCCTGTTTGCCCTGTTCCCTTCAGACACGGATGGCATTAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no463_i21.g1 MSMg01no463_i21.g1 CHROMAT_FILE:
MSMg01no463_i21.g1 PHD_FILE: MSMg01no463_i21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:38:00 2005
         (606 letters)



>mm_chr4_132864343_132865348
          Length = 1006

 Score = 1129 bits (584), Expect = 0.0
 Identities = 600/612 (98%), Gaps = 12/612 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtaagggatagcgagaattatcatccactcagttcctatctggagaggagtcagaaaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 806 agtaagggatagcgagaattatcatccactcagttcctatctggagaggagtcagaaaaa 747

                                                                       
Query: 61  agggctccttaggcagcgcagctcggcgtgcatggtgaccactccgactgcacgaagtgc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 746 agggctccttaggcagcgcagctcggcgtgcatggtgaccactccgactgcacgaagtgc 687

                                                                       
Query: 121 agatcctgactgaacttctgtgctgatcggctgctgctcgatagccaggctcactttggt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 agatcctgactgaacttctgtgctgatcggctgctgctcgatagccaggctcactttggt 627

                                                                       
Query: 181 gagctcttacaaacttagtgatacgagagggagaaggcgcgctgacacccaggccattct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 gagctcttacaaacttagtgatacgagagggagaaggcgcgctgacacccaggccattct 567

                                                                       
Query: 241 ccttcagta------tttttttctctcctatctcctgccaatcatttgatctcttgtgag 294
           |||||||||            |||||||||||||||||||||||||||||||||||||||
Sbjct: 566 ccttcagtagccagc------tctctcctatctcctgccaatcatttgatctcttgtgag 513

                                                                       
Query: 295 cagttcctgcctcatgctggagaccgcattttgatcacgggggcagctgactccaaggtg 354
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 cagttcctgcctcatgctggagaccgcattttgatcacgggggcagctgactccaaggtg 453

                                                                       
Query: 355 cacgtccacgaccttacggtaaaggagacgatccacatgtttggagaccacacaaaccgg 414
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 cacgtccacgaccttacggtaaaggagacgatccacatgtttggagaccacacaaaccgg 393

                                                                       
Query: 415 gtgaagcgcattgccacggcgcccatgtggcctaacacgttctggagcgccgcagaggat 474
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 gtgaagcgcattgccacggcgcccatgtggcctaacacgttctggagcgccgcagaggat 333

                                                                       
Query: 475 gggcttatccggtaaggatctctgcatgaaattactgtatgtgctccgcttcagtggctc 534
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 gggcttatccggtaaggatctctgcatgaaattactgtatgtgctccgcttcagtggctc 273

                                                                       
Query: 535 tgctgcaatgcttccttccacctggtctttcccccagcagacaggaagtgggtctcctcc 594
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 tgctgcaatgcttccttccacctggtctttcccccagcagacaggaagtgggtctcctcc 213

                       
Query: 595 ctgttccagtgt 606
           ||||||||||||
Sbjct: 212 ctgttccagtgt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 606
Length of database: 1006
Length adjustment: 10
Effective length of query: 596
Effective length of database: 996
Effective search space:   593616
Effective search space used:   593616
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)