BAC Information

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BAC

Clone NameMSMg01-464E08
Chromosome4 (Build37)
Map Location 46,164,123 - 46,164,386
singlet/doubletsinglet
Overlap geneAU014645
Upstream geneFrmpd1, Rg9mtd3, Exosc3, LOC666325, Wdr32, Mcart1, Shb, LOC100040140, LOC100040557, Gm829, LOC100040567, LOC100040580, Aldh1b1, Igfbpl1, 1300002K09Rik, Tdrd7, Tmod1, BC057893
Downstream geneXpa, LOC624430, LOC666379, LOC666389, Foxe1, 5830415F09Rik, Hemgn, LOC100040643, Anp32b, Nans, Trim14, Coro2a, Tbc1d2, Gabbr2, Anks6, LOC435781, Galnt12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-464E08.T7 (MSMg01no464_e08.b1)MSMg01-464E08.TJ (MSMg01no464_e08.g1)
ACCAG548726AG548727
length752758
length of high quality
(start - end)
343 (76 - 418)264 (326 - 589)
definitionCHROMAT_FILE: MSMg01no464_e08.b1 PHD_FILE: MSMg01no464_e08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:38:58 2005CHROMAT_FILE: MSMg01no464_e08.g1 PHD_FILE: MSMg01no464_e08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:38:58 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGATCGTAAAGTGGGGGGGCGGTGTGCGACTCACTATTCGGAGAGGAGCC
GCGGAATTCTGATGTGTCAAGAAAGCCAGACCCTCCCCCTTAATGACAAT
ACATATGAAATAATTATATTTATATAAAATTCCAGAAAAAGCAAGAGCTC
TATAGTAAGTAAGTGGGCACTTACAGGACTAAACGGTAGGGAATGAGGCA
AACATAGAAAGAGAGAACTTTGAGGGTGTGGCTATGTTCCTTATGTTACT
ATGATTGTTTCTCTGTTGTATGCATACCAAACACATGAAAGTGTACATTT
GAATCGTGCAGCTTATAGTATGTCTAGTGTACCTCAAACTGTAAAAAAAA
AAAAAAAAAAAAATTGCTGTTTGAGTAAGTAGCAGCAGGCTTTCAGCAAA
AATATACAGAATGATGCCCAGTTTTCACAACGGGTTAAAGCAATCCAGCA
TTAAATAAATGTTAGTGGAATTACCGTGGAGCGAATAAATAGCAGCTATT
CACCTTGTTTTGAATGAATTAAAGAATTTGATAAGCACTTATTTTACGCT
TATTATATACTGGGCAGTGTTCTAGGATCTCTGCCCTCTAATAGCTTTAG
TTTTACACGAGCGAGTGAAAGTAGCGTTGGCTACCTTGCCTGAACGTTTT
GTGGTTTCATTACTTTCACTATATTCTCCCCTCCCCCCAACCATTGCTCT
TACATCACTCGTTGATTACCCTTTGTTTTATATTATCCCACTACTTTTTC
GA
NTCAATGAAGTGNTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXTTTTCAGCAAAATTCATATCCCCATAAATACAGCTGCAAA
TATATGTGCACACATATACACAAGAATATTCCCATCTTGTTTATCGTACC
AGGAACCTGCACAGAATAAATATCCACATAGTGTGGACTAATAAAGAGAA
ATTATGTCCTATTTCAAAAAAATAATAATAATACTGTTAATAAACCCAAT
CATATGGAACCATGTGCTTTTATATAACTGCAAAGAAAAAAGCATGGAAA
TAAGTGCATATGCATGCAATTTATTGTTCACACACTGTGTTACTGACATC
TGTGTAAGATCAGCATGTGTCTCCACAGTCACATTTACATGCACACAGAT
ATGTAAAAAAAGTCTTTAGATGTCATGTTCATTTGCACCAAACAAAGCAA
TGTTAACGGTATTCAAAGAAGTATGACAGAAGTCGGTCTATGGAAGCCGA
AGGAGCTCAGGGCCATTCACTGTCTAATGACATAATTGGTGTGAACTAAC
TAGGGACGCTCACTAATAAGGCCCATTGTTTGATTGGACCTAATAAAATA
AAGCTTGTTTTTCACACTGCCCTGGGGAAAGGTTTGGGCTTANAATTAAC
ATGTATGAAATTAAACTGTGCCAGGGCAGTGGCTCCTATTCCGAACCAAT
CCGAAACATGTCTGAATTTCTGGCCGTCAACCTCTGTACCCTATAATAGG
GTGTAATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no464_e08.g1 MSMg01no464_e08.g1 CHROMAT_FILE:
MSMg01no464_e08.g1 PHD_FILE: MSMg01no464_e08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:38:58 2005
         (264 letters)



>mm_chr4_46163923_46164586
          Length = 664

 Score =  511 bits (264), Expect = e-149
 Identities = 264/264 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   gttcacacactgtgttactgacatctgtgtaagatcagcatgtgtctccacagtcacatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 gttcacacactgtgttactgacatctgtgtaagatcagcatgtgtctccacagtcacatt 405

                                                                       
Query: 61  tacatgcacacagatatgtaaaaaaagtctttagatgtcatgttcatttgcaccaaacaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 tacatgcacacagatatgtaaaaaaagtctttagatgtcatgttcatttgcaccaaacaa 345

                                                                       
Query: 121 agcaatgttaacggtattcaaagaagtatgacagaagtcggtctatggaagccgaaggag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 agcaatgttaacggtattcaaagaagtatgacagaagtcggtctatggaagccgaaggag 285

                                                                       
Query: 181 ctcagggccattcactgtctaatgacataattggtgtgaactaactagggacgctcacta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 ctcagggccattcactgtctaatgacataattggtgtgaactaactagggacgctcacta 225

                                   
Query: 241 ataaggcccattgtttgattggac 264
           ||||||||||||||||||||||||
Sbjct: 224 ataaggcccattgtttgattggac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 264
Length of database: 664
Length adjustment: 9
Effective length of query: 255
Effective length of database: 655
Effective search space:   167025
Effective search space used:   167025
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)