MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-465J10
Chromosome	4 (Build37)
Map Location	9,028,225 - 9,028,637
singlet/doublet	singlet
Overlap gene	none
Upstream gene	Car8, LOC100039494, LOC100039505, LOC100039478, Rab2, EG666752, LOC666760, Chd7, LOC666782
Downstream gene	LOC100039584, 4933402J24Rik, Asph, Gdf6, 4930448K20Rik
Link	Open Mouse BAC browser

no map image available.

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BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-465J10.T7 (MSMg01no465_j10.b1)	MSMg01-465J10.TJ (MSMg01no465_j10.g1)
ACC	AG549733	AG549734
length	1,542	772
length of high quality (start - end)	---	413 (67 - 479)
definition	CHROMAT_FILE: MSMg01no465_j10.b1 PHD_FILE: MSMg01no465_j10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:40:45 2005	CHROMAT_FILE: MSMg01no465_j10.g1 PHD_FILE: MSMg01no465_j10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:40:45 2005
singlet/doublet	---	singlet
BLAST hit	no hit data	unique
sequence	CACTTCTCACTGGTACGGAGGAGCAAAAGAAGAGAATACCTACGTTGCCC GCTCGGCCTAGGGGGCGTGGCGGGCGTTATATATAGTGATNTGTGGGAGG GTTTGTGCCGGCGAGTTATGTTGTGCGCGGGATGAAAGAATGAATGGGGC GAGGGAGGGGTAGGTGTGTGGGCTATTACTATAATATTCAGTAGAAATCC GCCAGACGCTATAGATATAAATTAAAAGACATCGGAGGGTTAGAGGGGTG GGTGGTGGCTGTGCGATAGGGGACGCGAACGCGCCGCGCGGTGTGAGTGG TAGTTACGAGTATCTATAAGTGTTGTGTTGTGTGACTAGATCCGAGGGGT TGCGTTCATATAACGGTATCTCATCGTGCTTCAGTGTAATATTTACTTCT TGTGCTGATGTTATATCACTCACCTCTAGTTAGTTTACTCTGCCGTCGCC CTAAAGATGCCTAATACATTATACTATTCAGCGTCTCGCCTGCTCTATAC GTCCATTACGTTAGTCGCTCGTATTGTCGCGGGATTGAGTGACCACTGTT GTGTTGTGTGTAGAGCGCGCGAGACAGCTGTGCGCGAGGCGCGGNTGATG AGCGACGACGACGCTGTATATGAATATTCGACTGACAACGGACGCCGGCT AATAAGGTCTGTGTATCGCCGATGTCGTAGTGTATTGGTGGCACCTGATA GTGTATGGTCTTTATACGTCGAGGCNAGTAACCGGCCTGTCTACTGTTAG TATCTACAGTCCCAGTGAACACTCACGATTTACGACATTATAGCGCGAGA CGCTGCCGACGTATATCGTGCGCAGATATANCGTTCATATTCGCCGCGCG CACCGTNTATCTATTGCTGCTAAGCATATGTCAGCGTATCGTAGTTTATA TATTTNGCGCGAGATATCGAGATGGTGTGATGCGCGTGTGTNGTAGTCGA GTTGACGCTGTCATTATGCAANCGTAGCGACACTATATACGACGGTTGCT GCGCCGAGCACTCGACGCGTGGTGTCTATGAGTGCGTATCATGCGCGCGC GCCGCGTGTCTATGTAGCGCCGCATTCCTTGTTACATTTGAGACGCGCCA GTACTAACGTCGGCACTGTATATAGACGCTGCGNTGCGCTAACTCATAGA TATATTATGTACACTCAGTCGATTTCGCGCACACTTACACCCATTTATAG TCGATACTACAGACGCGCGACGCGCCGCTACTAATCCGCTTCTTATTATT ATATACCGTCTCATACGGCTCGGGCGCAGACGCTGACATGTCGAGGTGTC GGCGAGATGATTATGCGGATNCGATTGCGAGATATATATATNGTGCTAGA GATGCACGGATTGATAAGAGACGAGTGTGGATCGAGTGATGATGACGTAT GAGCGTCCGCACCTCTCGCGCGATATTTGATCTTATGTGTTCTGCCGATG TACAGAGTATCTATGCCGCCGACTATATACTGTATCGCTCGTGCTCGTGG TTATGGTCGCCAGCGCGCTGATATGACGCGATATTCGCGCCN	AGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXTTAAAAACAACAACAACAACAACAACTAGTTGCA TGCATGTGGAAGTCAGGGGACACCGTGCAAGAGTAACTTCTCGTCTTCTA CCTTTAAGTTGTTGGCTTGACAGGAGTTGCTTTACTTAGTGAGCCGTGAA ATTCTTTTCTTAATTTCCTTTTATAGTTCATATCATCTAGACACAACTGG CTTTTTAAAATATTATATTTTGATTCCTAAAGCCTTACTAAATTCATTTA TTAGTTCTTATGGTAATTTTGAAAACAGGGGATCTTTAGGGATTTCTATG CCAGGCCAAGGCATCTGTGAATCGAAGCAATTGTACTTCTTCTATCTACT CTGTTTTGGAGGCTGTGCCATTGCTATTATGAATAGACAGAGTTAGTCTT GAACCTAGAGATCTGAGGTTCCATGCATATCAGACCACTGTTCTCTTCCC CTAGACTGCAGTCCAATTGGATGGCCTTTACTTCAGTTTTTGCCTAATTT CTCGAGCCAGGAAATCTATCTTCCTGAGAGAGGCTGGGGTTTATGAAAAT TAAAATTCCTTTTCCCTTCCTAGTCCTCCTCTTTGTTAATGGGCCCAGTT TTGCGTTATATTATCCACCTTCGCCGCCACCGGTTAAAAACGGTTTTCTC CCTTCATTTGGTGCTTTCTTTTCCTCTGTTTTTCTTACTGTTTCCCTCTC TGTCATGTCTCGCTTTATTAAN
quality values	Open. 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Alignment Information

BAC End 1	BAC End 2
	Query= MSMg01no465_j10.g1 MSMg01no465_j10.g1 CHROMAT_FILE: MSMg01no465_j10.g1 PHD_FILE: MSMg01no465_j10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:40:45 2005 (413 letters) >mm_chr4_9028025_9028837 Length = 813 Score = 752 bits (389), Expect = 0.0 Identities = 407/413 (98%) Strand = Plus / Plus Query: 1 ttaaaaacaacaacaacaacaacaactagttgcatgcatgtggaagtcaggggacaccgt 60 \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| Sbjct: 201 ttaaaaacaacaacaacaacaacaactagttgcatgcatgtggaagtcaggggacaccgt 260 Query: 61 gcaagagtaacttctcgtcttctacctttaagttgttggcttgacaggagttgctttact 120 \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| Sbjct: 261 gcaagagtaacttctcgtcttctacctttaagttgttggcttgacaggagttgctttact 320 Query: 121 tagtgagccgtgaaattcttttcttaatttccttttatagttcatatcatctagacacaa 180 \|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| Sbjct: 321 taatgagccgtgaaattcttttcttaatttccttttatagttcatatcatctagacacaa 380 Query: 181 ctggctttttaaaatattatattttgattcctaaagccttactaaattcatttattagtt 240 \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| Sbjct: 381 ctggctttttaaaatattatattttgattcctaaagccttactaaattcatttattagtt 440 Query: 241 cttatggtaattttgaaaacaggggatctttagggatttctatgccaggccaaggcatct 300 \|\| \|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| Sbjct: 441 ctaatgggaattttgaaaacaggggatctttagggatttctatgccaggccaaggcatct 500 Query: 301 gtgaatcgaagcaattgtacttcttctatctactctgttttggaggctgtgccattgcta 360 \|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| Sbjct: 501 gtgaatcaaagcaattgtacttcttctatctactctgttttggaggctgtgccattgcta 560 Query: 361 ttatgaatagacagagttagtcttgaacctagagatctgaggttccatgcata 413 \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\| Sbjct: 561 ttatgaatagacagagttagacttgaacctagagatctgaggctccatgcata 613 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.34 0.600 1.10 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 2, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 20 Number of extensions: 1 Number of successful extensions: 1 Number of sequences better than 10.0: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 413 Length of database: 813 Length adjustment: 9 Effective length of query: 404 Effective length of database: 804 Effective search space: 324816 Effective search space used: 324816 X1: 8 (15.9 bits) X2: 517 (999.5 bits) X3: 517 (999.5 bits) S1: 8 (16.4 bits) S2: 8 (16.2 bits)

BAC End 1

BAC End 2

Query= MSMg01no465_j10.g1 MSMg01no465_j10.g1 CHROMAT_FILE:
MSMg01no465_j10.g1 PHD_FILE: MSMg01no465_j10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:40:45 2005
         (413 letters)



>mm_chr4_9028025_9028837
          Length = 813

 Score =  752 bits (389), Expect = 0.0
 Identities = 407/413 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttaaaaacaacaacaacaacaacaactagttgcatgcatgtggaagtcaggggacaccgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttaaaaacaacaacaacaacaacaactagttgcatgcatgtggaagtcaggggacaccgt 260

                                                                       
Query: 61  gcaagagtaacttctcgtcttctacctttaagttgttggcttgacaggagttgctttact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcaagagtaacttctcgtcttctacctttaagttgttggcttgacaggagttgctttact 320

                                                                       
Query: 121 tagtgagccgtgaaattcttttcttaatttccttttatagttcatatcatctagacacaa 180
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taatgagccgtgaaattcttttcttaatttccttttatagttcatatcatctagacacaa 380

                                                                       
Query: 181 ctggctttttaaaatattatattttgattcctaaagccttactaaattcatttattagtt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctggctttttaaaatattatattttgattcctaaagccttactaaattcatttattagtt 440

                                                                       
Query: 241 cttatggtaattttgaaaacaggggatctttagggatttctatgccaggccaaggcatct 300
           || |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctaatgggaattttgaaaacaggggatctttagggatttctatgccaggccaaggcatct 500

                                                                       
Query: 301 gtgaatcgaagcaattgtacttcttctatctactctgttttggaggctgtgccattgcta 360
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtgaatcaaagcaattgtacttcttctatctactctgttttggaggctgtgccattgcta 560

                                                                
Query: 361 ttatgaatagacagagttagtcttgaacctagagatctgaggttccatgcata 413
           |||||||||||||||||||| ||||||||||||||||||||| ||||||||||
Sbjct: 561 ttatgaatagacagagttagacttgaacctagagatctgaggctccatgcata 613


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 413
Length of database: 813
Length adjustment: 9
Effective length of query: 404
Effective length of database: 804
Effective search space:   324816
Effective search space used:   324816
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

BAC Information

Search Parameter

Search Result

BAC

no map image available.

BAC End Information

Alignment Information