BAC Information

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BAC

Clone NameMSMg01-466C18
Chromosome4 (Build37)
Map Location 110,815,820 - 110,816,173
singlet/doubletsinglet
Overlap genenone
Upstream geneElavl4
Downstream geneLOC100040381, 2310026E23Rik, Spata6, LOC621612, Slc5a9, LOC639774, C130057D23Rik, LOC639781, 9530098N22Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-466C18.T7 (MSMg01no466_c18.b1)MSMg01-466C18.TJ (MSMg01no466_c18.g1)
ACCAG550180AG550181
length1,123742
length of high quality
(start - end)
---354 (78 - 431)
definitionCHROMAT_FILE: MSMg01no466_c18.b1 PHD_FILE: MSMg01no466_c18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:41:33 2005CHROMAT_FILE: MSMg01no466_c18.g1 PHD_FILE: MSMg01no466_c18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:41:33 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTCTCTTGTCATTTAATTTTATTGTCTTATTCGCATGAGCACGGGCTACC
TTCACACCCCTTGGTGATACATCCTTACTCATCTATATAATCACCCGTCT
CGTGTTCAGTGCGTTGCTGATGGGTGCTCCGACCGCGGCCGCCTCCCAAC
AGCACGACTGCTATCTCATGCCGCCGGAATATGGGAAGACAAACATGATA
ATAAGAGTGAACCAGAGATGTTTCGTACGCGTATTTTCTTTCCCACCCCC
TTCACAAAGCCTTCAGATAATTTATAATACAAACTAATCACACGCCGCCC
CTTCCGGTTTTGCTAATATTATAAGGGACGAAAAGTAGAGGTGTTGGCGG
GACANCGGGAAATTTAGATGGTGAGTGTTGAATGTATATATCGGTTAAAT
TGTCGCATATAAACTAACTGTAAACAATCAGATTGTTAATTATGAGGCGA
TATGGACGTATTGCCTCGCTGCAGCGGCAATAGCACCCTACTTTATACAT
TACATAGCTTCCGCTCTTCTTGTCCGTGCGCCCCTTATATATTTGCGTTC
TGACACGAGCGTGGGGATAGCCGAAGCAGGCAATGATGAAGAAAGATTCC
AACTACTTCCCATATTTCTTGTTAACGGCGCATATGGCTGTTTGCGACCT
ATGTCGTAGATGGGATGCTCTATTATATGCACCGGCCCACCGCTTGTTCT
ACATCTTAACACTAAGCTGCTTCACACTCTAAATATTATATACTATAATT
CACTCACACTTCTTTTCTACATCCCGCCTGTGTAGTGATATTTTGTTATG
ATCGTATCAATTATACGTCAATATTGTACCACACCTTCTTAGTTCTATAC
GTACCAGGCCACTCCTATTGTCCCGCGCCGCATGCATAGGGGTGGGTAGA
GTATAGACACACGTCGCTCATATGAACCTCGCTGGAATGTTAGTTGTGTG
TGCGGGCCACACGCATAACGTAGCACGTGATATAAATACTGACATCTTAC
CTTTATAATCAATTCCAACATGATCACACATCCTTCCGTTAGCATCCGCA
TTGTGTAGATGCCGACTGATATCAGATAGGGTAATTACCGCCAGCTCCGA
ACACCGCTCAGGTAGTATGTTGN
NAAACCGATGCTATGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTAAGTTTAGATGCATGAATATAA
AAAAAATCACACTTAATCATTTAAACTATTTCAATCTTAGCTGTTCACTT
TGTAATAGATGATTTGGCTAGATAGTCTTGCAAAGACTCAGTTCAAGAGC
ATTTCAGTTATTTATAGCCAATGCATAATATGAGGTTATGGAAAATTTGG
GTTATGTTTTCTTAATTAATGATGCTTATTTCTGTCTTGGCCTGGTGCCA
AACCCTAACTATACTGTTCTATTAAGTACAGAGAATGAACTCCAGACTCT
CAAGTATGATTAGTATTTTTAGTTGGGAAGAAACTGAGGGAACTTAGGAG
TGATGAAAGATAACTATATAGTGAGATGAAGACACAAAGCACACAGGCAA
GAGTTCTGTGCTGGGCCCTTTCAGCTCTCCAAATGTATCTTTTTGGCTAT
GTCCATAGATTGGTAAATTCTAATGATGAATTGTATTAAATGGGAAGCAC
TGTGCATAGATACTGCTTCCCCTTTCAAGTCTTATGCTTGATTCCCACAT
TTTGCCGATCTGTTTCCTTCTAGTGATCTTTCTGTCCTATTGGCTCTAAT
ACTTCTTGTATTTTGTTCTTCTCACCCCTCCAATACCCTCAAGTGACCGC
TATTAACCTACCGCCTTCTTTCTCACGCTTTAAAAGAAATCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no466_c18.g1 MSMg01no466_c18.g1 CHROMAT_FILE:
MSMg01no466_c18.g1 PHD_FILE: MSMg01no466_c18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:41:33 2005
         (354 letters)



>mm_chr4_110815620_110816373
          Length = 754

 Score =  648 bits (335), Expect = 0.0
 Identities = 350/355 (98%), Gaps = 2/355 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   taagtttagatgcatgaatat-aaaaaaaatcacacttaatcatttaaactatttcaatc 59
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 554 taagtttagatgcatgaatataaaaaaaaatcacacttaatcatttaaactatttcaatc 495

                                                                       
Query: 60  ttagctgttcactttgtaatagatgatttggctagatagtcttgcaaagactcagttcaa 119
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 ttagctgctcactttgtaatagatgatttggctagatagtcttgcaaagactcagttcaa 435

                                                                       
Query: 120 gagcatttcagttatttatagccaatgcataatatgaggttatggaaaatttgggttatg 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 gagcatttcagttatttatagccaatgcataatatgaggttatggaaaatttgggttatg 375

                                                                       
Query: 180 ttttcttaattaatgatgcttatttctgtcttggcctggtgccaaaccctaactatactg 239
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 374 ttttcttaattaatgatgcttatttctgtcttggcctggtgccaaaccctaactatacag 315

                                                                       
Query: 240 ttctattaagtacagagaatgaactccagactctcaagtatgattagtatttttagttgg 299
           | | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 tcc-attaagtacagagaatgaactccagactctcaagtatgattagtatttttagttgg 256

                                                                  
Query: 300 gaagaaactgagggaacttaggagtgatgaaagataactatatagtgagatgaag 354
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 gaagaaactgagggaacttaggagtgatgaaagataactatatagtgagatgaag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 354
Length of database: 754
Length adjustment: 9
Effective length of query: 345
Effective length of database: 745
Effective search space:   257025
Effective search space used:   257025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)