BAC Information

Click to search

BAC

Clone NameMSMg01-467B08
Chromosome4 (Build37)
Map Location 99,448,219 - 99,674,544
singlet/doubletdoublet
Overlap geneItgb3bp, BC020077, Pgm2
Upstream geneAnkrd38, LOC100039541, Usp1, Dock7, Angptl3, LOC665193, Atg4c, LOC665212, LOC638890, LOC100042589, Foxd3, Alg6
Downstream geneRor1, Ube2u, LOC277707, LOC621573, Cachd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-467B08.T7 (MSMg01no467_b08.b1)MSMg01-467B08.TJ (MSMg01no467_b08.g1)
ACCAG550878AG550879
length737759
length of high quality
(start - end)		479 (71 - 549)244 (72 - 315)
definitionCHROMAT_FILE: MSMg01no467_b08.b1 PHD_FILE: MSMg01no467_b08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:42:50 2005CHROMAT_FILE: MSMg01no467_b08.g1 PHD_FILE: MSMg01no467_b08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:42:50 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(99,448,219 - 99,448,697)(99,674,308 - 99,674,544)
sequence
AATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCAAGAGGAATTCTAAAGCACACAACCTGATTAAGAAGAACACATGTCTT
CTAGAGATGATAACAGTACTTCTATCTGGACAGCTTTGGGGTATGTGTGA
TCTCTCAGACCGAAACTTGAGAAACATGGGAAGGTTTATCTCTAAAATTA
CTAACATTAAAAATCCAGGTGCTGGAGAGATGTCTCAGAAGTTAAGAGCA
GTGGCTGCTCTTCTGGAGGCCCTGAGTTCAATTCCCAGAACCCACATGGT
GGCATACAACTGTCTATAATGGAATCTAATGCCTTCTTTGGATAGACAGA
CAAACCACCCATATACATAAAATACACAAATTAAAAAATCTTTTAAAAAA
ATACATAAATGTTTCTTACTTAGTTCTTTGGTTTTCCTTGCTTCACTTTT
TAAGGAGCATGGTACTAGAGAAACACCAATGAGATCTTCAAGTTGTCTGT
TGCCTTCCAAAGCCTGAAAGAAAACTACTTTTAATGAGTTAAATAAGTTC
TCTACCACTAAGAGATTATTTACAAAGGAAATATAATACATTGCTTCTTC
ATTTACAAGATCTTAAATTAAGAAATTTGAGTTTTCCTGGTACATCATGT
ATTACAGGCCCTATTATCCCTATTAACACAATTTTGGGTGTTTGGTTATT
TTCTTTCCCCCTTTCTTCTTCCTTCCTCTCCTCCTTA

GATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTAGGCCATACTACTGCTGTGTTGGGCTTT
CCATAGTGTCGAGGGGCCTGAACTTCGGTCTCGTGTTTATGTGTTTACCC
TTTGATCCATCACCCAGTACAGAAGTTTTTGTATGACCAAAAAGAAACAC
TGCCTGTACTAAAGAAATAGGAATAAAGACATGGATTTAGGAGTCCTGAG
ATGAACTGGTTATTATAATGCCCAGGTCAGCAGCCAGAACTGCACTGGGT
CAGAAAGCTTATACAATCTAGCAGACAGCCAAGGCTTTCCTCCAATCTGT
GAATCAGGTACATTACAACTTGTTATCTGTAGGGGGAGGAGCTGACAACT
AAAGTCTGGCTCCCTAATTGTTTCTTGATTGGGACAATAAAGACAGCAAA
AGCTAATGTTGGGTGAAGAACAAGAAGGCGATGAACAAAGGATTGGTAAT
TCGGACCCTTTGTGCATCCTATTATAACACTGATTTGAAGGTCTTTTTGA
CCACTATTTTGTACTCCCCTGTACCCTGTGTACTCTAATTGCGATAGGCG
CCAATATTTTCTTTTCTCCCTCCCCTCGCCTTTTCTTGCCCTTTTTTTAT
AAATTTATAAAACCCTCATCTTTTTTCCCTCATTCACCCTCATACCCCGT
TCTTTTCTTCATACAAATTCCCTTCCTCTTACCCCTTAACCTCATTACAT
TTCCTCCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no467_b08.b1 MSMg01no467_b08.b1 CHROMAT_FILE:
MSMg01no467_b08.b1 PHD_FILE: MSMg01no467_b08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:42:50 2005
         (479 letters)



>mm_chr4_99448019_99448897
          Length = 879

 Score =  903 bits (467), Expect = 0.0
 Identities = 476/479 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cacaacctgattaagaagaacacatgtcttctagagatgataacagtacttctatctgga 60
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cacaacctgattaaaaagaacacatgtcttctagagatgataacagtacttctatctgga 260

                                                                       
Query: 61  cagctttggggtatgtgtgatctctcagaccgaaacttgagaaacatgggaaggtttatc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagctttggggtatgtgtgatctctcagaccgaaacttgagaaacatgggaaggtttatc 320

                                                                       
Query: 121 tctaaaattactaacattaaaaatccaggtgctggagagatgtctcagaagttaagagca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tctaaaattactaacattaaaaatccaggtgctggagagatgtctcagaagttaagagca 380

                                                                       
Query: 181 gtggctgctcttctggaggccctgagttcaattcccagaacccacatggtggcatacaac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtggctgctcttctggaggccctgagttcaattcccagaacccacatggtggcatacaac 440

                                                                       
Query: 241 tgtctataatggaatctaatgccttctttggatagacagacaaaccacccatatacataa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgtctataatggaatctaatgccttctttggatagacagacaaaccacccatatacataa 500

                                                                       
Query: 301 aatacacaaattaaaaaatcttttaaaaaaatacataaatgtttcttacttagttctttg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aatacacaaattaaaaaatcttttaaaaaaatacataaatgtttcttacttagttctttg 560

                                                                       
Query: 361 gttttccttgcttcactttttaaggagcatggtactagagaaacaccaatgagatcttca 420
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 561 gttttccttgcttcactttttaaggagcatggtactagggaaacaccaatgagatcttca 620

                                                                      
Query: 421 agttgtctgttgccttccaaagcctgaaagaaaactacttttaatgagttaaataagtt 479
           |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agttgtctgttgccctccaaagcctgaaagaaaactacttttaatgagttaaataagtt 679


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 479
Length of database: 879
Length adjustment: 10
Effective length of query: 469
Effective length of database: 869
Effective search space:   407561
Effective search space used:   407561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no467_b08.g1 MSMg01no467_b08.g1 CHROMAT_FILE:
MSMg01no467_b08.g1 PHD_FILE: MSMg01no467_b08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:42:50 2005
         (244 letters)



>mm_chr4_99674101_99674744
          Length = 644

 Score =  420 bits (217), Expect = e-122
 Identities = 232/237 (97%)
 Strand = Plus / Minus

                                                                       
Query: 8   tactactgctgtgttgggctttccatagtgtcgaggggcctgaacttcggtctcgtgttt 67
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 444 tactactgctgtgttgggctttccatagtgtcgaggggcctgaccttcggtctcgtgttt 385

                                                                       
Query: 68  atgtgtttaccctttgatccatcacccagtacagaagtttttgtatgaccaaaaagaaac 127
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 384 atgtgtttaccctttgatccatcacccagtacagaaatttttgtatgaccaaaaagaaac 325

                                                                       
Query: 128 actgcctgtactaaagaaataggaataaagacatggatttaggagtcctgagatgaactg 187
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 324 actgcctgtactaaagaaatgggaataaagacatggatttaggagtcctgagatgaactg 265

                                                                    
Query: 188 gttattataatgcccaggtcagcagccagaactgcactgggtcagaaagcttataca 244
           ||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 264 gttgttataatgcccaggtcagcagccagaactgcacagggtcagaaagcttataca 208


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


| Home | SequenceCutter | Blast | Download |