BAC Information

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BAC

Clone NameMSMg01-467E05
Chromosome4 (Build37)
Map Location 138,966,119 - 139,105,502
singlet/doubletdoublet
Overlap geneZubr1
Upstream geneLOC625646, 0610009K11Rik, Camk2n1, LOC100040618, 4931403E03Rik, Ubxd3, Pla2g2c, Pla2g2f, Pla2g2d, Pla2g5, Pla2g2a, Pla2g2e, Otud3, Rnf186, Tmco4, Htr6, LOC665683, Nbl1, 2310028O11Rik, Hspe1-ps4, 9530077C14Rik, Capzb, Pqlc2, LOC100042808, Akr7a5, LOC625977, LOC626000, Mrto4, C230096C10Rik
Downstream geneC79267, Aldh4a1, Tas1r2, Pax7, Gm1667, Klhdc7a, Igsf21, LOC100040728, Arhgef10l
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-467E05.T7 (MSMg01no467_e05.b1)MSMg01-467E05.TJ (MSMg01no467_e05.g1)
ACCAG551014AG551015
length790772
length of high quality
(start - end)
244 (71 - 314)244 (74 - 317)
definitionCHROMAT_FILE: MSMg01no467_e05.b1 PHD_FILE: MSMg01no467_e05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:43:04 2005CHROMAT_FILE: MSMg01no467_e05.g1 PHD_FILE: MSMg01no467_e05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:43:04 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(138,966,119 - 138,966,361)(139,105,260 - 139,105,502)
sequence
AATXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGAATCCGCGGAAT
TCACCTGAGTTCCGAGAATGTGACATCTTACACACTCTGCGATGGTCGTC
TCGCCTCCGGATCAGTTCCTATGTCAGCTGGATAAAGGTGCCAAAGGGGA
GCTCAGCCTGCTGTGGGGGAGCTTCACAGGCCATGTGCTTTGTCCTCTGG
GGGCTTCTAAAGTTAATGAAAGCTTTGCACTTTCCAGGTTGTTTTTCCTA
ACTCACTCTCTTGCTATCCATAGGATCACCTTATCAAACAAGGCATGAAG
CCCGAGCATGCGGTTNCTCNCATAGAACTGGCTGCCAGCAAGTGTAGTTC
AGTGAAGTACGATGTTGAGATTGTAGAGGAGTACTTTGCCCGACAGGTAT
GCTGTTATTCTGCTGGCAGCGACTGGACTGGGCTCTGCCAGAGACTTTCG
GTACAGTTAACTAATTAAACCCCTGGCTGTTCTTAAAGATCCCGTCCTTC
CGCTCCATTGACTGTACTGCCTTCCTTCCACTCGTTGTAAACCTTCAGTC
TGGAATTCCACTAATCCCATGTATTGCCGCTGTTCCCCTATATACCTATC
TCCCCCCGTTATTTACCTCTCCCTATCAAATTTCCTACATATATCCTAAC
CTTCCTTCATCTTCTTCTTATATACCCCCTAATCTCACTCCTTCCCTTCA
TCCCTTATCTCTTCTTCTATTATTCTGNCAGCTCCTTCGCTGCATCTATT
AATTTCTCACCACATTCCCCCCCTCTTATATCTCCTTTTC
ATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCTAGAGCAGAAAATATTTCCAAGCCAG
TCCTCCTTCAGCTTCTGGTATGCTGTCTTAACCGGGGACTCTGTGGTTTG
GGAACTGGGGACATCTGGAGATCAGTGAACATCTTAAAGTTGTAACAAAA
TGACCCGTGTGTGGGCTCATTACACTCTCCAGAACAAAGGTTCTCAATTC
TCATTAAGGGTGTTTGCCACGCCAGCATACACAAACATGCACACACAAAC
AGAAGCACGCACGCGCTTTTTCACAAGCATACACACCGCACTTGTTAACA
CAGTGTTTGTGATCCTGCCATCTGTCAATTGGGTTATAACTGAACATACA
CTACAGCCTGTAAATGGCTAAAAGTTGTCAAATCCCCAGCTGATTCCCAA
AATGCTATGTATGCTTGCAATATGTCAATCTCTCACACTCTTGATTGGAT
GGATGTACATTTGTATGGATGTATGCTTTCTTTCTTCCCTCCCCTTCTCT
TTTATCCCTTCTTTCTTTTTTATTTTCTTATCTTCCTCCTCTCTCACCCC
ATTTTTCCTCTTATTTCTTTTCTTTTTTCCTATCCCTCTTATATTTTTCT
TCTCCCATCCCTCTTCTACTTTTTTTTCAACTTATTCCTACTCTATCCAC
TCATTTATTTCCACTCCTTCTTTTCTCACTTCTTTTTTCCCTTTTCCTTT
TTCTCTTTCCCTTATATTTCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no467_e05.b1 MSMg01no467_e05.b1 CHROMAT_FILE:
MSMg01no467_e05.b1 PHD_FILE: MSMg01no467_e05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:43:04 2005
         (244 letters)



>mm_chr4_138965919_138966562
          Length = 644

 Score =  470 bits (243), Expect = e-137
 Identities = 243/243 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgacatcttacacactctgcgatggtcgtctcgcctccggatcagttcctatgtcagctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgacatcttacacactctgcgatggtcgtctcgcctccggatcagttcctatgtcagctg 260

                                                                       
Query: 61  gataaaggtgccaaaggggagctcagcctgctgtgggggagcttcacaggccatgtgctt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gataaaggtgccaaaggggagctcagcctgctgtgggggagcttcacaggccatgtgctt 320

                                                                       
Query: 121 tgtcctctgggggcttctaaagttaatgaaagctttgcactttccaggttgtttttccta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgtcctctgggggcttctaaagttaatgaaagctttgcactttccaggttgtttttccta 380

                                                                       
Query: 181 actcactctcttgctatccataggatcaccttatcaaacaaggcatgaagcccgagcatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 actcactctcttgctatccataggatcaccttatcaaacaaggcatgaagcccgagcatg 440

              
Query: 241 cgg 243
           |||
Sbjct: 441 cgg 443


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no467_e05.g1 MSMg01no467_e05.g1 CHROMAT_FILE:
MSMg01no467_e05.g1 PHD_FILE: MSMg01no467_e05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:43:04 2005
         (244 letters)



>mm_chr4_139105060_139105703
          Length = 644

 Score =  470 bits (243), Expect = e-137
 Identities = 243/243 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctagagcagaaaatatttccaagccagtcctccttcagcttctggtatgctgtcttaacc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 ctagagcagaaaatatttccaagccagtcctccttcagcttctggtatgctgtcttaacc 384

                                                                       
Query: 61  ggggactctgtggtttgggaactggggacatctggagatcagtgaacatcttaaagttgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 ggggactctgtggtttgggaactggggacatctggagatcagtgaacatcttaaagttgt 324

                                                                       
Query: 121 aacaaaatgacccgtgtgtgggctcattacactctccagaacaaaggttctcaattctca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 aacaaaatgacccgtgtgtgggctcattacactctccagaacaaaggttctcaattctca 264

                                                                       
Query: 181 ttaagggtgtttgccacgccagcatacacaaacatgcacacacaaacagaagcacgcacg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 ttaagggtgtttgccacgccagcatacacaaacatgcacacacaaacagaagcacgcacg 204

              
Query: 241 cgc 243
           |||
Sbjct: 203 cgc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)