BAC Information

Click to search

BAC

Clone NameMSMg01-467G08
Chromosome4 (Build37)
Map Location 136,027,484 - 136,027,932
singlet/doubletsinglet
Overlap geneLuzp1
Upstream geneNpal3, 4930555I21Rik, Grhl3, 1700029M20Rik, Il28ra, Il22ra1, LOC665334, Myom3, Fusip1, Pnrc2, Cnr2, Fuca1, Hmgcl, Gale, Lypla2, 1110049F12Rik, LOC669445, Tceb3, Rpl11, Id3, E2f2, Ddefl1, Tcea3, Zfp46, Hnrpr, Htr1d, LOC100042540
Downstream geneAof2, LOC667080, LOC433770, 4930549C01Rik, BC029684, Ephb2, C1qb, C1qc, C1qa, Epha8, Zbtb40, Wnt4, Cdc42, LOC665533, LOC242711, Ela3, 1700013G24Rik, Hspg2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-467G08.T7 (MSMg01no467_g08.b1)MSMg01-467G08.TJ (MSMg01no467_g08.g1)
ACCAG551115AG551116
length743767
length of high quality
(start - end)
450 (72 - 521)242 (69 - 310)
definitionCHROMAT_FILE: MSMg01no467_g08.b1 PHD_FILE: MSMg01no467_g08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:43:15 2005CHROMAT_FILE: MSMg01no467_g08.g1 PHD_FILE: MSMg01no467_g08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:43:15 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCACXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCATACACATCCGCGG
AATCCAGAACTTTTCATTACTGATTATATGCATGAGCTTGGGATAGTCAC
TTTTACATTCTGACCTTCAATTTGCTCAACTAGCACTTCACAGGCTTGCA
ATGACTACGTAATATACTCAATACTCAGTATTATTGAATGACAACTCAAC
AGTATGAGTTTCCTTTCTTGGTCTTCAGGCTTTAAAAAAAAATATGGATT
AATGGCTAATTAACAAACAATCCATGTTATGGGAACTAGAGAGAGGGCAA
AATGTTTAAGAACCCTTCTTGCTCTCCAGAAGACCAAAGTTCAGTTTCCA
GCACACATGTCAGGCATCTCCCAACCATAGCTGCCTATAACAAAAACTTG
AGAGGGATCTGGCCTCAGAAACACCTGAACTCATGTGAGCATTCCCATAC
ACAGGAAGACAAATCTTTTTTAAACTCCATGTTATTAGTGGATGGTCAGC
TGTGAACCTATACTTCCTGCCTTCATAGTCCAATCCATCCCTTACCCATC
CCACTATTTCTAGTTTTTCTTACTTTATCTGCTATGTTTAAAAAAGTGAT
TTAATTTTAAGAAACCCGGAAAATTCTTTCCGAGTATATTGAGTTATTAT
CTTAATCTGCCCCCCAGGTGGATATTTCTCGCGCCAAAATCTACTTATTT
TCTATTACATGCACAAAAAATCCTCCCACAAAGGCTTCCATAT
CATGCAGTTGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXTACGCAAAATTCTTGGTTACCCTGGGCTATGAGAGAAACCAG
AGCTGGTGGGGAGGACAGGACTTCCCACTGGATTTTGTAATTTAGTTCGT
TTCGCTTTCTGGTTTTCTGAGGCAAGGCCTTGGTAGCCTTGGCTGTTCTC
CGGAACTGTAGCTCTGTAGACCAGGCTGGCCTCGTACTTACAGAGATCCA
TCTGCCTGCCTCTGCCTCCTGAATGCTGAGATCAAAGGGCGTGTGCCACT
CCCAAAGCCAATGTTTTGCTTTTGCACTTCTCAGAACCTGAAGCCCGTGG
CTCTTGACCGTTGCCTTTGACAGTTGGTCTCCAATTCTGGGGTCCTTCCA
AACTAGAGGCTTCCTGTATCATTTTTCTCATCTTAGAAGTCTTGAATGTG
GAACACTTGACAGGTTCCATATCCCATACTGGTTCCGGGTGTGTGTTGAT
TTCCTTATGTTTTTTAACTTTTCTCTTATTATTCTTGTATCTTTTCTCTT
TTTTACCCTTCCCCTCCTTTTTCCCTTTTCTTTCTCTTTACTTTTATTTC
CCTCCTCTTTCACTCTTTCCTTACCCCCCCTCTTTTTTTCCCTTTTCTTT
TCCTTTTCTCCTTTTTTTACTATCTTCTCTCCATCCCCTCTCCTTTTTTT
CTTTTCCTTTCCACATTCCCATCCTTCTTTCTAACTTATTAATTCCTATG
CATTCTCTCTATTTGTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no467_g08.b1 MSMg01no467_g08.b1 CHROMAT_FILE:
MSMg01no467_g08.b1 PHD_FILE: MSMg01no467_g08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:43:15 2005
         (450 letters)



>mm_chr4_136027284_136028132
          Length = 849

 Score =  847 bits (438), Expect = 0.0
 Identities = 447/450 (99%), Gaps = 1/450 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   gattatatgcatgagcttgggatagtcacttttacattctgaccttcaatttgctcaact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 649 gattatatgcatgagcttgggatagtcacttttacattctgaccttcaatttgctcaact 590

                                                                       
Query: 61  agcacttcacaggcttgcaatgactacgtaatatactcaatactcagtattattgaatga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589 agcacttcacaggcttgcaatgactacgtaatatactcaatactcagtattattgaatga 530

                                                                       
Query: 121 caactcaacagtatgagtttcctttcttggtcttcaggctttaaaaaaaaatatggatta 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |
Sbjct: 529 caactcaacagtatgagtttcctttcttggtcttcaggctttaaaaaaaaatatggagga 470

                                                                       
Query: 181 atggctaattaacaaacaatccatgttatgggaactagagagagggcaaaatgtttaaga 240
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 a-ggctaattaacaaacaatccatgttatgggaactagagagagggcaaaatgtttaaga 411

                                                                       
Query: 241 acccttcttgctctccagaagaccaaagttcagtttccagcacacatgtcaggcatctcc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 acccttcttgctctccagaagaccaaagttcagtttccagcacacatgtcaggcatctcc 351

                                                                       
Query: 301 caaccatagctgcctataacaaaaacttgagagggatctggcctcagaaacacctgaact 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 caaccatagctgcctataacaaaaacttgagagggatctggcctcagaaacacctgaact 291

                                                                       
Query: 361 catgtgagcattcccatacacaggaagacaaatcttttttaaactccatgttattagtgg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 catgtgagcattcccatacacaggaagacaaatcttttttaaactccatgttattagtgg 231

                                         
Query: 421 atggtcagctgtgaacctatacttcctgcc 450
           ||||||||||||||||||||||||||||||
Sbjct: 230 atggtcagctgtgaacctatacttcctgcc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 450
Length of database: 849
Length adjustment: 10
Effective length of query: 440
Effective length of database: 839
Effective search space:   369160
Effective search space used:   369160
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)