Query= MSMg01no468_a23.b1 MSMg01no468_a23.b1 CHROMAT_FILE:
MSMg01no468_a23.b1 PHD_FILE: MSMg01no468_a23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:44:07 2005
(482 letters)
>mm_chr4_135439122_135440004
Length = 883
Score = 880 bits (455), Expect = 0.0
Identities = 473/481 (98%), Gaps = 5/481 (1%)
Strand = Plus / Minus
Query: 5 gaattcctcaggattc---cattttcctgatggcctgggtacctcctcacttaggctgaa 61
||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 gaattcctcagga--caagcattttcctgatggcctgggtacctcctcacttaggctgaa 626
Query: 62 gtgctaagtcaattattcccactcattaatgaaaaacaagataaaaacaagaacatcctt 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gtgctaagtcaattattcccactcattaatgaaaaacaagataaaaacaagaacatcctt 566
Query: 122 aaaaatacattgaaaaaattcccaacattccagaggacgtctgacgcaagctccctgctt 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 aaaaatacattgaaaaaattcccaacattccagaggacgtctgacgcaagctccctgctt 506
Query: 182 tgccctttaaacctaacccactagattctttccagagagcttgccagggtcaaggtggtc 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tgccctttaaacctaacccactagattctttccagagagcttgccagggtcaaggtggtc 446
Query: 242 agaaaggggggaaaagaagaagcagagggttgctcaggactctgtcagatacctccagtt 301
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 445 agaaaggggggaaaagaagaagcagagggttgctcaggactctgtcagacacctccagtt 386
Query: 302 gtattcttcggggtcacactctactggggaggtggggccacttgaaagctgaactcccgc 361
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gtattcttcagggtcacactctactggggaggtggggccacttgaaagctgaactcccgc 326
Query: 362 aggagagagattcttttgtgtacagtctttcgtgtgtgcgacctgacctagaaactctgg 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aggagagagattcttttgtgtacagtctttcgtgtgtgcgacctgacctagaaactctgg 266
Query: 422 ggaagtttgagcgagttgttccaaggcaccggcctatgcgagttcatcaaaatgactcac 481
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 265 ggaagtttgagcgagttgttccaaggcagcggcctatgcgagttcatcaaaatgactcac 206
Query: 482 g 482
|
Sbjct: 205 g 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 482
Length of database: 883
Length adjustment: 10
Effective length of query: 472
Effective length of database: 873
Effective search space: 412056
Effective search space used: 412056
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no468_a23.g1 MSMg01no468_a23.g1 CHROMAT_FILE:
MSMg01no468_a23.g1 PHD_FILE: MSMg01no468_a23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:44:07 2005
(380 letters)
>mm_chr4_135243667_135244446
Length = 780
Score = 688 bits (356), Expect = 0.0
Identities = 374/380 (98%)
Strand = Plus / Plus
Query: 1 tccctgtgaccatgagctcccgtggggcagaagatgaagccatttccttctgttccctgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tccctgtgaccatgagctcccgtggggcagaagatgaagccatttccttctgttccctgg 260
Query: 61 tacacagaggaagataggaagcatgggttaaagctggtcgggtgtggttgttcctgcgtg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tacacagaggaagataggaagcatgggttaaagctggtcgggtgtggttgttcctgcgtg 320
Query: 121 tattcctagtacccaagaggctgagttaagagattaccgcacatttgagctagcctagac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tattcctagtacccaagaggctgagttaagagattaccgcacatttgagctagcctagac 380
Query: 181 taagctgtttgtctttcccatagtcaaaaggggactggtgagatggctctgaaggtaagc 240
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taagctgtttgtctctcccatagtcaaaaggggactggtgagatggctctgaaggtaagc 440
Query: 241 gttcctgacattttatggacagaatctacacgttagaaggaaagaaccaatgtctgcaaa 300
|||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 441 gttcctgacattcaatggacagaatctacacgttagaaggaaagaaccaatgtttgcaaa 500
Query: 301 gtgagcttttacctccgcatagacaccatagcgtgcatcacacacatgataaataaatgt 360
|||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtgagcttttgcctccacatagacaccatagcgtgcatcacacacatgataaataaatgt 560
Query: 361 aaaaggtgattaaagcaggt 380
||||||||||||||||||||
Sbjct: 561 aaaaggtgattaaagcaggt 580
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 380
Length of database: 780
Length adjustment: 9
Effective length of query: 371
Effective length of database: 771
Effective search space: 286041
Effective search space used: 286041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
