BAC Information

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BAC

Clone NameMSMg01-468G15
Chromosome4 (Build37)
Map Location 17,481,406 - 17,481,847
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040154, LOC667212, LOC100040173
Downstream geneMmp16
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-468G15.T7 (MSMg01no468_g15.b1)MSMg01-468G15.TJ (MSMg01no468_g15.g1)
ACCAG551891AG551892
length795785
length of high quality
(start - end)
244 (78 - 321)435 (75 - 509)
definitionCHROMAT_FILE: MSMg01no468_g15.b1 PHD_FILE: MSMg01no468_g15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:44:37 2005CHROMAT_FILE: MSMg01no468_g15.g1 PHD_FILE: MSMg01no468_g15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:44:37 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NAATCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTAAGAACTACCTTGCTAGAAAATATATAATTTCTTAACTATGC
ACGAAAATAAGGATGCAATATGAATTTTATGAGGGGCTTCATGAATCAAA
AGGAACAAAGCAGCTGCACTCTGAGCCAACTTGTAAGAAAGATACTAAGG
AAGGAGATAAAGAGATTTAGGGAGTGGTAATCAAAGGGGATTCCACCCAG
CAGAGATATATATTTTTTTATGCTTACAAAGGCAGAGAGATTCCTGAGTT
CAGAGTCAGACTAGCATAGAGCAAGTTTATTCCTGTGTGTGGTAGAAATA
GTAATTTCAAGATGAGCTAGAGAAAGTACCCAAGGAGCTAAAGGGATCTG
CAACCCTATAGGTGGAACAACAATATGAACTAACCTTTACCCTGGAGCTC
TTGTCTCTAGCTGCATATGTATCAAAAGATGGCCTAGTCGGCCATCACTG
GAAAGAGAGGTCCATTGGTCATGCATACTTTACATGCCTCAGCACAGGGG
AACGCCAGGGTCATTAAGTGTCATTGCTTGGTCTACCTTTACTTTTTTAT
CTCTTTTCTCTTCTTTTCTTTCCATTTTTTCCCTTTCTTCCCTACTTCCG
ATTTCCTTCTTCATTCCCTATTATTTCCTTTCCTCTCCTCTTTTATCCTT
CTTTTCCTCCCTTCCCTCTTAATTCTTTTTTTTCACTTATTTTTAATTTT
CTCTTTTCTTCTCCTTTTCATTCTATTATTCCTCACCCCCCACCT
NCGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCACCTATGATTTCATTAAAAGTAATT
ATGATGTTATATCTACAATGGGTTATTACAATATAAATATAAACATTAAA
AGTAAATTTTAGCTAAAAGACTGGTTTAGGCTTTTTTTCTCTCTTAGAAT
AAAATTTAGCATGTTGATTAGCCTTGGCATAGAGTGGGAAACTAGAAACC
AAGAAAGGATCAACAGTGCCAATTCAAAATTATTTCAAAAAAGAATAGAT
TTAAACACACAAGCAAATACACATTCTTTCACACACACACACACACACAC
ACACACACAAAACACACACAAAGCAGTTGCAGTAATTGGAGACTGATGTC
ACAGATATTGACTATATCCAAAGAATTATTATCATCAGAACTTGGACATG
AAAAATGAAATAATGAAATAATGAATTGACCAGAAAAATGGAATTCTTAC
TTTAAATATACATTTTTTATTTCCACATTTTAATATATTATGGGTATCTT
AACAACATATATGAAATCACTTTCCCGGACAAGGTTTTAAAAATATGGTG
GTCAAGGCAGAAAAAGGGGTGACATGGCCTTTATTCCCCGACATTGGGAG
GGAGAGGAGGGCAGATTTCTTTTCTTGGCCTCCCAAGGGAGTGGAAGGAA
AACCTTGGGTCTCCCCGAAAACCCCCCTTTGGGTCCTTTTTTTTTTTGTC
ATAATAACACATTTCCACCAACAGGGGGGCTACAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no468_g15.g1 MSMg01no468_g15.g1 CHROMAT_FILE:
MSMg01no468_g15.g1 PHD_FILE: MSMg01no468_g15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:44:37 2005
         (435 letters)



>mm_chr4_17481212_17482047
          Length = 836

 Score =  750 bits (388), Expect = 0.0
 Identities = 426/448 (95%), Gaps = 19/448 (4%)
 Strand = Plus / Plus

                                                                       
Query: 1   cacctatgatttcattaaaagtaattatgatgttatatctacaatgggttattacaatat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 cacctatgatttcattaaaagtaattatgatgttatatctacaatgggttattacaatat 254

                                                                       
Query: 61  aaatataaacattaaaagtaaattttagctaaaagactggtttaggctttttttctctct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 aaatataaacattaaaagtaaattttagctaaaagactggtttaggctttttttctctct 314

                                                                       
Query: 121 tagaataaaatttagcatgttgattagccttggcatagagtgggaaactagaaaccaaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 tagaataaaatttagcatgttgattagccttggcatagagtgggaaactagaaaccaaga 374

                                                                       
Query: 181 aaggatcaacagtgccaattcaaaattatttcaaaaaagaatagatttaaacacacaagc 240
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 375 aaggatcaacagtgccaattcaaaattatttcaaaaaggaatagatttaaacacacaagc 434

                                                                       
Query: 241 aaatacacattctttcacacacac--acacacacac------acacaca----cacaaaa 288
           |||||||||      |||||||||  ||||||||||      |||||||    |||||||
Sbjct: 435 aaatacaca------cacacacacgcacacacacaccaccccacacacaaacacacaaaa 488

                                                                       
Query: 289 cacacacaaagcagttgcagtaattggagactgatgtcacagatattgactatatccaaa 348
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 cacacacaaagcagttgcaataattggagactgatgtcacagatattgactatatccaaa 548

                                                                       
Query: 349 gaattattatcatcagaacttggacatgaaaaatgaaataatgaaataatgaattgacca 408
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 549 gaattattatcatcagaacttggacatgaaaaatgaaataatgaaattatgaattgacca 608

                                       
Query: 409 gaaaaa-tggaattcttactttaaatat 435
           |||||| |||||||||||||||||||||
Sbjct: 609 gaaaaaatggaattcttactttaaatat 636


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 435
Length of database: 836
Length adjustment: 9
Effective length of query: 426
Effective length of database: 827
Effective search space:   352302
Effective search space used:   352302
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)