Query= MSMg01no470_f16.b1 MSMg01no470_f16.b1 CHROMAT_FILE:
MSMg01no470_f16.b1 PHD_FILE: MSMg01no470_f16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:47:14 2005
(507 letters)
>mm_chr4_83982713_83983623
Length = 911
Score = 907 bits (469), Expect = 0.0
Identities = 499/515 (96%), Gaps = 12/515 (2%)
Strand = Plus / Plus
Query: 1 aagtttctgtttctttaatgcctacattaggaacacaacactactgtttctcatttgtct 60
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 201 aagtttctgtttctttaatgcctacattatgaacacaacactactgtttctcatttgtct 260
Query: 61 gaaggaaaacaatgttttgcaaaagaaacagcacgtatatcatttcttccaataacaaac 120
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 261 gaaggaaaacaatgttttgcaaaagaaacagcatgtatatcatttcttccaataacaaac 320
Query: 121 caaaccatatctaacttagtgtctaactcaaataaaacctctccaagcaagaagcccttc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caaaccatatctaacttagtgtctaactcaaataaaacctctccaagcaagaagcccttc 380
Query: 181 attcttaagaaagcagaatctcactttcattcaaagtttcaactaagcatactacagctc 240
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 381 attcttaagaaagcagaatctcactttcattcaaagtttcaactaagtatactacagctc 440
Query: 241 tttaataatttttac----ttgtatcaagtttacatcagatttgaagggaaagagtgagg 296
||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tttaataat----acagacttgtatcaagtttacatcagatttgaagggaaagagtgagg 496
Query: 297 agggaggttatacgcatctcccttttccattagtgtaaacacccagaggtcaggaaacat 356
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 497 agggaggttatacgcatctcccttttccattagtgtaaacatccagaggtcaggaaacat 556
Query: 357 ggcctaaccatttcatagctcctcatctcagcaaggttatgctagacttaaaagtgccct 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 ggcctaaccatttcatagctcctcatctcagcaaggttatgctagacttaaaagtgccct 616
Query: 417 attctaccctaggaa----caaagaaacacctcaagacaggtcccaacgctaacaaccag 472
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 attctaccctaggaagatacaaagaaacacctcaagacaggtcccaacgctaacaaccag 676
Query: 473 ttataatgtctaagttctgaatttacattatagta 507
|||||||||||||||||||||||||||||||||||
Sbjct: 677 ttataatgtctaagttctgaatttacattatagta 711
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 507
Length of database: 911
Length adjustment: 10
Effective length of query: 497
Effective length of database: 901
Effective search space: 447797
Effective search space used: 447797
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no470_f16.g1 MSMg01no470_f16.g1 CHROMAT_FILE:
MSMg01no470_f16.g1 PHD_FILE: MSMg01no470_f16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:47:14 2005
(491 letters)
>mm_chr4_84166788_84167678
Length = 891
Score = 919 bits (475), Expect = 0.0
Identities = 487/491 (99%)
Strand = Plus / Minus
Query: 1 attaattctttcagtcatgtacccattcagtaattgagattgaaaccaggatcatttgtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 691 attaattctttcagtcatgtacccattcagtaattgagattgaaaccaggatcatttgtt 632
Query: 61 cggagagtcttgtactactgagctcgtctttgattctatgatggagacaggatattaacc 120
| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 631 cagagagtcttgtactactgagctcatctttgattctatgatggagacaggatattaacc 572
Query: 121 ttgaggaagggaaaagaataatacacgctagaggttgtggcttgttgtagggccttcata 180
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 ttgaggaagggaaaagaagaatacacgctagaggttgtggcttgttgtagggccttcata 512
Query: 181 gtctgtagccccttgagttgttctgtagctttggtccctagggaagcttgactgtttaga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 gtctgtagccccttgagttgttctgtagctttggtccctagggaagcttgactgtttaga 452
Query: 241 aacaacggtgtaaagctttaggaaagcatttcttccttcacctgtaggaagggagagaac 300
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 aacaacggagtaaagctttaggaaagcatttcttccttcacctgtaggaagggagagaac 392
Query: 301 agtgttaccaggtccgggaggtccaaaatcatctccgtctttctgtgataccctctgtga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 agtgttaccaggtccgggaggtccaaaatcatctccgtctttctgtgataccctctgtga 332
Query: 361 caaattctattgcacctacttatccttgtatcgccagtcttaaccatttgcttaaatttt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 caaattctattgcacctacttatccttgtatcgccagtcttaaccatttgcttaaatttt 272
Query: 421 aaacatttcctatttgtgctagataaaaagccggaacaagtgagttgtagaaatcgcttg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 aaacatttcctatttgtgctagataaaaagccggaacaagtgagttgtagaaatcgcttg 212
Query: 481 gcccttctgga 491
|||||||||||
Sbjct: 211 gcccttctgga 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 491
Length of database: 891
Length adjustment: 10
Effective length of query: 481
Effective length of database: 881
Effective search space: 423761
Effective search space used: 423761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
