BAC Information

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BAC

Clone NameMSMg01-470J11
Chromosome4 (Build37)
Map Location 4,241,781 - 4,242,024
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC631371, LOC666513, Tmem68, Tgs1, Lyn, LOC621858, Rps20, Mos, Plag1, Chchd7, LOC666586, Rdhe2, 4833413O15Rik, Penk1, A830012C17Rik
Downstream geneLOC100039297, LOC622019, Impad1, LOC100039338
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-470J11.T7 (MSMg01no470_j11.b1)MSMg01-470J11.TJ (MSMg01no470_j11.g1)
ACCAG553558AG553559
length738740
length of high quality
(start - end)
139 (181 - 319)246 (76 - 321)
definitionCHROMAT_FILE: MSMg01no470_j11.b1 PHD_FILE: MSMg01no470_j11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:47:33 2005CHROMAT_FILE: MSMg01no470_j11.g1 PHD_FILE: MSMg01no470_j11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:47:33 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCCTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTACACACCACCGC
CGGAATCTGGACTCTGGCTAACCACAGACCCGAAATCTTGGGCAAGAGAA
CAGGAAGTACAGACAAAAGCATCATCAACAGAATACACAAAATTCAAGAG
AGAGTCTCGGCATAGAAGATACTATGGAAGAAATTGATATATCAGTCAAA
GACAATGTTGAATCTAAAACATTTCAGAAATAAAACATCTGGCAAATATG
GGATACTATGAAAAGATCAAATGTAAGAATAATAGGAATAGAAGAAGAAG
ATTCTCAGCTCCATGGTGTAGATTTTTTTTTCAATAAAATTATAGAAGAA
ACATTCTCCAACCTATAGAAAGAGATGCCTATAAACGCGTAAGATGATTA
CAGAACACCAGATATATTGGACCAGAAAAGAAAAACCTCCTGCCCCATAA
TCAAAACACTAAATGTACAGAACATAAAATATTTGAAAAATACCAGAGAA
CAAAAAGCCCATTAACATACAAAGGCAGACCTCCTTAGAATTACACCTGA
CTTCTCCACAGAGATTCTACCAGCCAAAGGGCTCTAAGCAGATGTCCTGG
AGTCTCTAACAGACCCCAGATGCCAGTCCAGAGCACTATGTTTTCAACCC
TCCTACATGCATCATAGAACACATTCCCTGACACCACGGAATTTAAACCA
TACCCATTCCCCAATCCCGCCTCACCGACCATCCCACA
NCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCCAAAATTCACTCCTCTGTGGNTTAATTACATC
TTAGATAATTCAGCCTCAGACTTTTGCCAATTGTTTATCTATATTTAATC
ATTTTGGAAATTTGTCTTTTCAGCAACATTCTCAGTGATAGGCCTTTCAT
TCACACAGTCCCCAAATATCCTTTTCAGAAATATGAGTCAACTACATATA
GTCACCATTGTATTCCTGAGTATAATCTGCTGAAGAAGAGGAAGATGGAG
AAAGAGCATGTGGAGCAGGATTTATTATTAAGTAGGACACATTGATCAAG
CAGAAGACTAGTATTCCCACAGTTCATAAAAAGGGGGTGAGGTAGAATGG
AAAAATGAAGGCAGGTGTGTGCATGGGCTCCATACCATTGGTGATTTTTG
TAGAGGCTTCTTCTAAGTATTACTTTCCATGTCGTCAAGGTGGCCTCTGG
AGCAACAGGGCTTAATCATGTGTTCTGTGAACTCATGAGAGGCAAGTGCC
CAAATCCTGATGAACTAGGCTCTGGATTTTGTGTAATCTCAACATGACAT
GGTATGATTTCTTTCCTGAGTTGAATTCTTTCTAATCTTGTTACACTCTT
CGGCTAAAAATATTTTATCACCCCTGTCCTCATTGGCTTCCAGCTTTTAG
GTACAAAGCAGACTATAAAAACCCTTACATCTGCTATGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no470_j11.g1 MSMg01no470_j11.g1 CHROMAT_FILE:
MSMg01no470_j11.g1 PHD_FILE: MSMg01no470_j11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:47:33 2005
         (246 letters)



>mm_chr4_4241581_4242226
          Length = 646

 Score =  420 bits (217), Expect = e-122
 Identities = 237/244 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   cactcctctgtggnttaattacatcttagataattcagcctcagacttttgccaattgtt 60
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 cactcctctgtggtttaattacatcttagataattcagcctcagacttttgccaattgtt 385

                                                                       
Query: 61  tatctatatttaatcattttggaaatttgtcttttcagcaacattctcagtgataggcct 120
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tatctatctttaatcattttggaaatttgtcttttcagcaacattctcagtgataggcct 325

                                                                       
Query: 121 ttcattcacacagtccccaaatatccttttcagaaatatgagtcaactacatatagtcac 180
           ||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 324 ttcattcacacagtcgccaaatatccttttcagaaatataagtcaactacatatagtcac 265

                                                                       
Query: 181 cattgtattcctgagtataatctgctgaagaagaggaagatggagaaagagcatgtggag 240
           ||  |||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 264 caaagtattcctgagtataatctgctgaagaagaggaagatggagaaagagcatgtagag 205

               
Query: 241 cagg 244
           ||||
Sbjct: 204 cagg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 646
Length adjustment: 9
Effective length of query: 237
Effective length of database: 637
Effective search space:   150969
Effective search space used:   150969
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)