BAC Information

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BAC

Clone NameMSMg01-470L17
Chromosome4 (Build37)
Map Location 21,970,382 - 21,970,674
singlet/doubletsinglet
Overlap genenone
Upstream genePrdm13, Ccnc, 2610029I01Rik, Usp45, 4930528A17Rik, 5730406M06Rik, Coq3, 6230409E13Rik
Downstream geneLOC100040379, Fbxl4, Pou3f2, LOC664911, 1700025O08Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-470L17.T7 (MSMg01no470_l17.b1)MSMg01-470L17.TJ (MSMg01no470_l17.g1)
ACCAG553665AG553666
length743752
length of high quality
(start - end)
283 (69 - 351)426 (76 - 501)
definitionCHROMAT_FILE: MSMg01no470_l17.b1 PHD_FILE: MSMg01no470_l17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:47:44 2005CHROMAT_FILE: MSMg01no470_l17.g1 PHD_FILE: MSMg01no470_l17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:47:44 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAGCATCCGCGGAATT
CTCTCCNATTTTCAACTTCACTTGCTCTTCAGACCACTCCATTCTTTTCT
AACCATCTCAGACTTCAGTCAAATGAAACAGCTCAAAATGTTAAAAGAAA
AATAAAGTTTTGTTTTGGTTTGTTTTGTTTTGTTTAAAAAAAAAAGTCCT
TAGGAAAGAAAGCAGGAAACCCCAATGGAAATATTTTGCTGAAAGTCAGA
CTAAACTACAGCCTGCCTATGAGCCTCAGCACATCAGAGCACTTGACTGG
GACCTCTGGCACTTCCTTGTTTAACTTAGCACTGCTCACTTCTGAATCCA
AGCTGGTTGAGAGGTGAGGAAGTCATGTCAGGTGTCTACTCCATCCTGTG
TGCATTGTAGAGCCTACCCCTCAGAGCTGGAGAGCATTAGCACTGCATAC
AGCCAAACACTTGGTGATACGGCAAACCACACACAGGCCAGTAGTGAAGC
CAGGATCACCGCCAGGCTATCCTAATGCCAAAAATCAATCTACTTCTGCT
GTACCCCATAGCCAAAGATATAGACCTTTACTCCTCTTATACTATGTAGC
CCTTCTATTATGCATCCTAACATGCTGGTGTCCATGGACTGAATATTCAT
GAATAATACCGAACCCCACCACCCCGTGATTCTCTTCCCGCGACCTCTAA
ATATTTTTTTTCCTGAACCCCCCCCGCCGGCTGCCCCGCTTGC
CCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCTCACCTGTCTTGGAGTAGCCGGT
GTTGGTATTTGAGTCACAGTCCTTTTTCTAGCCTCTGTCAGCCACCATTT
TTCATCCCAGAGGTTATATCCCAAGTAGACTACTTCCATCTGACATAGCT
GGGCTTTTTTAGCAGAGGCCCGGTAACCCAACTCACCCAGTTCTGCTAGC
AATCTCTTGGTCCCCTGCCAGCATTCTCTCTCCGTGGTTGCAGCAAGGAG
CAAGTCATCAACATATTGAATTTTTTTTACCTGGGAGTTTTCAGCTCGGA
AGGAGGCTAAATCTCGATGTAGAGCCTCATCAAAAAGGGTGGGGGAGTTT
TTGAACCCCTGGAGTAACCGTGTCCAGGTCAATTGTCCCGTTTGTCCAGT
GTCAAGATCTCTCCACTCAAAGGCCAATATGGGCTGGCTGGAGGGATGTA
ACTTCAGGCAAAAGAAAGCATCTCTGAGAGGCACGGGGAATTCATGGTTT
GATTTATGGCCGTGAACTCTGAATGAGGTAAGGTTGTCTGATCTGGCGCG
ACCCAGGTCCGCTCTGAATAACATTGGCTTCACCTTCCTGATCAAAGTCA
ACCATATTTTCTTTTTGTTGACCATTCTACTTTACACATTCTGCCCTCTC
ATAGTGTTCTAATCTTTCGCCCCCGGTCCTTCTCCTAAACTTCTACTCAC
AG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no470_l17.b1 MSMg01no470_l17.b1 CHROMAT_FILE:
MSMg01no470_l17.b1 PHD_FILE: MSMg01no470_l17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:47:44 2005
         (283 letters)



>mm_chr4_21970065_21970747
          Length = 683

 Score =  441 bits (228), Expect = e-128
 Identities = 275/294 (93%), Gaps = 12/294 (4%)
 Strand = Plus / Minus

                                                                       
Query: 1   cacttgctcttcagaccactccattcttttcta-ac-ca-tctcagacttcagtcaaatg 57
           |||||||||||||||||||||||||||||||||  | || |||||||||||| |||||||
Sbjct: 610 cacttgctcttcagaccactccattcttttctagtctcattctcagacttcaatcaaatg 551

                                                                       
Query: 58  aaacagctcaaaatgttaaaagaaa--aataaagt-----tttgttttggtttgttttgt 110
           |||||||||||||||||||||||||  || |||||     ||||||||| ||||||||||
Sbjct: 550 aaacagctcaaaatgttaaaagaaaggaa-aaagttttgctttgttttgttttgttttgt 492

                                                                       
Query: 111 tttg-tttaaaaaaaaaagtccttaggaaagaaagcaggaaaccccaatggaaatatttt 169
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 tttgttttaaaaaaaaaagtccttaggaaagaaagcaggaaaccccaatggaaatatttt 432

                                                                       
Query: 170 gctgaaagtcagactaaactacagcctgcctatgagcctcagcacatcagagcacttgac 229
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 gctgaaagtcagactaaactacagcctgcctatgagcctcagcacatcagagcacttgac 372

                                                                 
Query: 230 tgggacctctggcacttccttgtttaacttagcactgctcacttctgaatccaa 283
           ||||||||||||| ||||||||   |||||||||||||||||||||||||||||
Sbjct: 371 tgggacctctggcgcttccttggcaaacttagcactgctcacttctgaatccaa 318


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 683
Length adjustment: 9
Effective length of query: 274
Effective length of database: 674
Effective search space:   184676
Effective search space used:   184676
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)