BAC Information

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BAC

Clone NameMSMg01-470P09
Chromosome4 (Build37)
Map Location 91,108,482 - 91,224,570
singlet/doubletdoublet
Overlap genenone
Upstream genePpia-ps4_804.1, LOC664840, LOC664848, LOC100042274, Elavl2, LOC664864
Downstream geneLOC620016, LOC654475, 4930577H14Rik, LOC664886, 1700011H22Rik, LOC68280
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-470P09.T7 (MSMg01no470_p09.b1)MSMg01-470P09.TJ (MSMg01no470_p09.g1)
ACCAG553840AG553841
length740810
length of high quality
(start - end)		242 (80 - 321)316 (81 - 396)
definitionCHROMAT_FILE: MSMg01no470_p09.b1 PHD_FILE: MSMg01no470_p09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:48:02 2005CHROMAT_FILE: MSMg01no470_p09.g1 PHD_FILE: MSMg01no470_p09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:48:02 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(91,224,329 - 91,224,570)(91,108,482 - 91,108,794)
sequence
CTTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCACAGAATCCGCGG
AATTCACAGTGTGTCTCCTGAAACCCTCCAAGTCTTTGACTGAATATTTC
ATATACTCTTTAGTAAGGGTAGCACACATGTGAACTGCCTTCTTCTAGAC
TGTCAATATGTGTCGGCTGAATATGCACAAGCAATTGGCATGCTGCTCTC
CCACTTGCTGCTCACAGGTTAAAAAGCAGCTGTCACCCCAATACTAGGGT
TCAGATCAGGAGCACAGTCAGCCTAGGCAAGCACAGTTTCCATTATGCCA
TCAGCTCCTCCCCTAATCCTGTCTTTCCACTGAGAAAGGCTGTTAGAGGC
AGAGCCAGCCAGTGACCCAGCTGCAAGTTTGTCCTTAGTTTTCTGAGACT
TGCCATCAGTGGCAATCCGCTGCGAGGTCTCATGGGAAGCAATGGTCCAC
AGCTTTCATCTACATACATTAAATCAAGTAGTTCTTTTTTTTTTCTTTTA
ATCATTTTAAATCTTTCCTCCCTTCCTTTACTACCCTGTTATTCCTAGTG
TGACTTGCTTCTATTTTTTTAAAGCTGTGCAGCCTACAGATTTTTAGCTT
GGACTAACATCTATCTGAGCTAAAAATCATCCAATTCTTTATTCATGCTT
AGCGACAGCAGCTTCGCCCATTAATGCGCCCCATTCCCATTGCATTTACC
CAATGCCTTCCTTTTCCCGAGCCACCCCCTCATTGGATTG

NCGAATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACAATGAACAAGACTTTATG
TGTTTCTTCCTTCCCAACTGCAAATTGGTCATTTTCTGGGAGTCTTACCA
GAAACCCCATTTACAGGGAAAGGATATATGCTCTAAACTCCATGTGTAAT
CCTAATGGCTTCTAGTTTTGTTTTTATCAGATTGTAACTCCAGCCAAGGC
ACATACAGAGTCACCTCACATATCAGAGACAGAGACAGAGAAAGAGACAG
ACAGACAGAAAGACAGACCAAGACACACATAGAGAGACAGAGACGCAGAA
GGAGAGGGGGAAGGAAAGGAAGAGGGGGAAGGAGAGGGAGAGGCCTTTTT
CCTCTTCCTTTTTCTCCCCCCCCCCCTCTCTCCTCCTTTTTTCCTCCTTT
TCCTTTTTCCCTCCTTTCTCCTTCCTCTTCCCTCCCTTTTTCTTCTCTCT
CTTTCCTCCCCTCTCCCTTCCTTNCTCTCTTCTCCTCCTCCCCTCTCCCT
CTCCTTTCTCCCTCTCTTCTCCCCCTCTTCCCTCCCTCCTCTCTTTTTTT
CTCTCCTTCTTCCTCCTTCGCCCCCCTCTCTCTCTTGCCTTTTGTCTTTC
TTCGTTCCCGTTCTTTCCCTCCTTCTTTTCCCCTCTGTTTTCTTCTTTCN
CTTCTTTCGTTCTCCCCTCCTCCTCCGNCTCGTCTTGCCTTCCTTCTCCT
TTTTCTCTCTCCTTTCTCTCTTTCCTCTCCCTTTCTCCCTTTTTCTTTCC
TCTTCCCTGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no470_p09.b1 MSMg01no470_p09.b1 CHROMAT_FILE:
MSMg01no470_p09.b1 PHD_FILE: MSMg01no470_p09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:48:02 2005
         (242 letters)



>mm_chr4_91224129_91224770
          Length = 642

 Score =  453 bits (234), Expect = e-132
 Identities = 240/242 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aagtctttgactgaatatttcatatactctttagtaagggtagcacacatgtgaactgcc 60
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 442 aagtctttgactgaatatttcatatactctttagtaagggtagcacacgtgtgaactgcc 383

                                                                       
Query: 61  ttcttctagactgtcaatatgtgtcggctgaatatgcacaagcaattggcatgctgctct 120
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 382 ttcttctagactgtcaatatgtgttggctgaatatgcacaagcaattggcatgctgctct 323

                                                                       
Query: 121 cccacttgctgctcacaggttaaaaagcagctgtcaccccaatactagggttcagatcag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 cccacttgctgctcacaggttaaaaagcagctgtcaccccaatactagggttcagatcag 263

                                                                       
Query: 181 gagcacagtcagcctaggcaagcacagtttccattatgccatcagctcctcccctaatcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 gagcacagtcagcctaggcaagcacagtttccattatgccatcagctcctcccctaatcc 203

             
Query: 241 tg 242
           ||
Sbjct: 202 tg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 642
Length adjustment: 9
Effective length of query: 233
Effective length of database: 633
Effective search space:   147489
Effective search space used:   147489
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no470_p09.g1 MSMg01no470_p09.g1 CHROMAT_FILE:
MSMg01no470_p09.g1 PHD_FILE: MSMg01no470_p09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:48:02 2005
         (316 letters)



>mm_chr4_91108282_91108997
          Length = 716

 Score =  598 bits (309), Expect = e-175
 Identities = 312/313 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   acaatgaacaagactttatgtgtttcttccttcccaactgcaaattggtcattttctggg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acaatgaacaagactttatgtgtttcttccttcccaactgcaaattggtcattttctggg 260

                                                                       
Query: 61  agtcttaccagaaaccccatttacagggaaaggatatatgctctaaactccatgtgtaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agtcttaccagaaaccccatttacagggaaaggatatatgctctaaactccatgtgtaat 320

                                                                       
Query: 121 cctaatggcttctagttttgtttttatcagattgtaactccagccaaggcacatacagag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cctaatggcttctagttttgtttttatcagattgtaactccagccaaggcacatacagag 380

                                                                       
Query: 181 tcacctcacatatcagagacagagacagagaaagagacagacagacagaaagacagacca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcacctcacatatcagagacagagacagagaaagagacagacagacagaaagacagacca 440

                                                                       
Query: 241 agacacacatagagagacagagacgcagaaggagagggggaaggaaaggaagagggggaa 300
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 441 agacacacatagagagacagagaggcagaaggagagggggaaggaaaggaagagggggaa 500

                        
Query: 301 ggagagggagagg 313
           |||||||||||||
Sbjct: 501 ggagagggagagg 513


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 716
Length adjustment: 9
Effective length of query: 307
Effective length of database: 707
Effective search space:   217049
Effective search space used:   217049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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