BAC Information

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BAC

Clone NameMSMg01-470P12
Chromosome4 (Build37)
Map Location 68,449,008 - 68,449,245
singlet/doubletsinglet
Overlap geneDbc1
Upstream geneLOC433715, Tcp1-ps1
Downstream geneLOC622491
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-470P12.T7 (MSMg01no470_p12.b1)MSMg01-470P12.TJ (MSMg01no470_p12.g1)
ACCAG553846AG553847
length757779
length of high quality
(start - end)
238 (81 - 318)247 (78 - 324)
definitionCHROMAT_FILE: MSMg01no470_p12.b1 PHD_FILE: MSMg01no470_p12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:48:03 2005CHROMAT_FILE: MSMg01no470_p12.g1 PHD_FILE: MSMg01no470_p12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:48:03 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXATCACACAACCACCGCGG
AATTCATTGTTTTATCACATCACTGTTTCATGAAACAGGTACTGTTACTA
TTCTCATATTACAGATAAAAACACTGAGGCAAAGGAATGTTAGGGATGTG
CCAAATGCCAGTCATTCTTGATAATTCAAATGAGTCGTTTGTTTTTTAGT
GAGAGGTCAACTCTGGATGTTTAGAACTTTATTTGATGAAAGCTTATTAC
CGTTTTGTTAGGCAGAGGACATATCTTAGTTATCTATTCGTGAAACTCAC
CCTAAAACACTCAAAATTATGCATTATGAACCCTCATGATTGTATAAGTT
GACTTGGTACAGTTGGAAGACTCTCAAATTGGCTGAGACCAGTGTCCTTG
GGTGACTTTCCTCAGTGCACCTCCAAAGTATCTCCCTCCCAGAGTTGGCA
GTTGATGCTGGCTGTCAGCTGGAGACTCAGCTGGGGCTGTCAACTAGAAT
GCTTACCCATGTCCTCTACATGTCATTTGGTCTTTTTGCAGCATGGCAGC
TGGCCTATGACAAGACCACCTCCTAAAAACACCGGAAGTCCTAAGATTTC
TTTCTACTTACCTTTGACAGCTAGAAAGCACCACTTCCACTTTCCCTACA
ACATTGCTTCTATTTACCGGGCCAATCCCTCCCTGTGTCACGATTTTTCT
CCCACCACCTTCTCTTGTCCGTTCCCCTCTACCTTTGGCACCACCTTACT
TCCTGCA
NCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTCTAGACACAGATTGCTTTACTA
AAAAGCCTACCAGATATTTAAATAAAAATTACTGTCAATGCTGCATAACT
GTATTAAGAAAACAGAAAAAAGAACACATTGACTTGTTTTTGAAAGCTAG
TATTCATACAAAAATCAGACAAGGACAGTACTAAAAATAAAAACAAATAG
AATTGAAGATCAACATCCCTTATGAAAACAGATATGATTTATATCTTTAA
CATATTATTAGAAAATTAAAGTCAGCCATAAACAAGACTAATTTTTATGC
CATGATTAAGTAGAGTTTACTCTAGATATTACAGGTGATTTGATACTTGA
TAGTCAATCCTTGTGACTAATGAACAATATATTATGTAGTCATCGTAATA
GGTTTGCTATTACCCCTTGCCCCTTATCCCCCCGCCCTCATCTTCTCCCC
CCCCCCCCTTTTTTTCCCCCCCTTTCCTTTCCTCCGCCTTCCCTCCCCTC
CTTTCCCCTTCACTCCTCCGCCTTCCCCTCTCTTTTCTTCCCCCCTCCCC
TTCTACATCCTTTCCCCCTCTTTCCTTTCTTTCCCCCCCTCCTCCTTCCC
TATTCCCCCTTCCTTTTTCCTTCCTCCCCTTTTTCCCCTTCCCCTTCTTT
CTTGTTCCCCCCCCCCTTCTCCTTGTTTTACTTATCGCCACGCTATCCCC
TCCCTCCACCCCCTCTCCATCCTTTTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no470_p12.b1 MSMg01no470_p12.b1 CHROMAT_FILE:
MSMg01no470_p12.b1 PHD_FILE: MSMg01no470_p12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:48:03 2005
         (238 letters)



>mm_chr4_68448728_68449365
          Length = 638

 Score =  406 bits (210), Expect = e-118
 Identities = 231/238 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgaaacaggtactgttactattctcatattacagataaaaacactgaggcaaaggaatgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 tgaaacaggtactgttactattctcatattacagataaaaacactgaggcaaaggaatgt 459

                                                                       
Query: 61  tagggatgtgccaaatgccagtcattcttgataattcaaatgagtcgtttgttttttagt 120
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 458 tagggatgtgccaaatgccagtcattcttgatatttcaaatgagtcgtttgttttttagt 399

                                                                       
Query: 121 gagaggtcaactctggatgtttagaactttatttgatgaaagcttattaccgttttgtta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||
Sbjct: 398 gagaggtcaactctggatgtttagaactttatttgatgaaagcttattaccgggctgtta 339

                                                                     
Query: 181 ggcagaggacatatcttagttatctattcgtgaaactcaccctaaaacactcaaaatt 238
           ||||||| ||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct: 338 ggcagagtacatatcttagttatctattcgtgaaattcaccctaaaacacacaaaatt 281


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 238
Length of database: 638
Length adjustment: 9
Effective length of query: 229
Effective length of database: 629
Effective search space:   144041
Effective search space used:   144041
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)