BAC Information

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BAC

Clone NameMSMg01-471C03
Chromosome4 (Build37)
Map Location 12,903,245 - 13,101,708
singlet/doubletdoublet
Overlap geneOTTMUSG00000004461
Upstream geneTmem67, C430048L16Rik, LOC230010, LOC623671, LOC100039958, Rbm12b, 6720467C03Rik, LOC545592
Downstream geneLOC100039988, Runx1t1, LOC625831, LOC433687
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-471C03.T7 (MSMg01no471_c03.b1)MSMg01-471C03.TJ (MSMg01no471_c03.g1)
ACCAG553972AG553973
length737802
length of high quality
(start - end)		521 (53 - 573)148 (82 - 229)
definitionCHROMAT_FILE: MSMg01no471_c03.b1 PHD_FILE: MSMg01no471_c03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:48:16 2005CHROMAT_FILE: MSMg01no471_c03.g1 PHD_FILE: MSMg01no471_c03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:48:16 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(12,903,245 - 12,903,761)(13,101,561 - 13,101,708)
sequence
TTAATACTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCAGCCATTTACCGATTTATGTACCACATTTTTATACATA
TCCCTTATTTAGTTTGCTGCTATACTTTTGGTTTGCTTAGAAGAAATTAT
TGTGTTCTGGTTATAAGTTAAAGACCAGTACATACTACTATTAGCTAATT
TATGCTTTAAAAACTATGAAAAATGAATTTTCTTATCTTTGTTTCACAAT
ATAAAGTATGTAGTGAAAGTATCTAATATAGATGCATATTTTAATAATCT
AACAAATCATTCTGAGTGCTAAGTCTAGAGAATCACAAACTATGATTTGC
CTTGAATAAATATGTCTGAGGCCATTGCTGTGATGGGAAAAGTTTAAGAA
TCAGAACCATGAAGGTGTCTTGCATTTCAAATCTAACATAGCGATTAGTT
TGTCTGTCAAACTTTGATTGCCTTGTCATTTTGGCATAGGATTTTAACTA
ACAGAGTTTCCTTCAGCAATTGTTTTTTAATGCTTTTTAATTTCCCTAGT
GAGTGATTTTATCCATATTGATAATGTCAGAGAAGCAACCGAGGACTAAT
GAACATCAAACACGTTTGACTCTTACCTAGCTGATACGCAATGACCATAA
TGTCATGGTACTACTTTGCTACTTTTGAGCGAGTTATGTCCACAGAAAAG
ATAAAGAGTTTCACAGAGTAGAAAAAGAACATCACTG

TTCCCGCGATGATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTGGGGAATTAACAGGGTC
ACAGTAAGTGCTATAATGAGTTATATTTTTATCTTCACAACAAATTAAAA
ATATCTACTTGGTAGACATATTGCAAAGGTTGAAGAAAACATTATTTTGT
ATGTAATATAAATCTCATGTGTGTGTGTGTGCGTGTGTCGCGTTATATTT
TTGTCTTTGTTGTTAATGTTTGATTTCTCGCCCCTTCATCTCGTTTTTCT
CCCCTCTCACTCCCTACTTTTTTTTTTTTTGCTGGTATTTTGGGTATTTC
TAACTGTTTCCTTCTTTTCTCTGCCCTACCCCCCCGCTTTTCCTTTTTTT
TTTCCCGCCCCCCGCCCCGAGTACCAGCTTAATTTCTCCGCCCCCCCCCC
CTTTCCCCTTCTCTTTCCCTCTCCATTGCGTCCATCTTTATCCGTTCCCT
CCGCCCTTATTTTTTTTTCCCCCCCCTCCCCCACCTACTTCAATCTCACT
CCCCCCCCCTCTACTCTTTCTCTTCTTTCCCCCCCCTTCCCTTGTTTTTC
GTATGGCCGCCTATTTCGCTCTCTCTCTCTATATTTCTTGCCTTCGCCGT
CTTTCCCTTTCTCCCCTTCTCTTTCATCCCCTTCTTTCCCGCTCTATTTT
CTTTTTTCCGGTTCCCACGTGTTCTTACTATGCCCCGGTTATTTTATTAT
TGATGCACACTCTATCGTATTGAGTTATTTGAGAGTCACATAATATAGTA
GN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no471_c03.b1 MSMg01no471_c03.b1 CHROMAT_FILE:
MSMg01no471_c03.b1 PHD_FILE: MSMg01no471_c03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:48:16 2005
         (521 letters)



>mm_chr4_12903041_12903961
          Length = 921

 Score =  977 bits (505), Expect = 0.0
 Identities = 514/517 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcagccatttaccgatttatgtaccacatttttatacatatcccttatttagtttg 64
           |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagccatttatagatttatgtaccacatttttatacatatcccttatttagtttg 264

                                                                       
Query: 65  ctgctatacttttggtttgcttagaagaaattattgtgttctggttataagttaaagacc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ctgctatacttttggtttgcttagaagaaattattgtgttctggttataagttaaagacc 324

                                                                       
Query: 125 agtacatactactattagctaatttatgctttaaaaactatgaaaaatgaattttcttat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 agtacatactactattagctaatttatgctttaaaaactatgaaaaatgaattttcttat 384

                                                                       
Query: 185 ctttgtttcacaatataaagtatgtagtgaaagtatctaatatagatgcatattttaata 244
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 385 ctttgtttcacaatataaagtatgtactgaaagtatctaatatagatgcatattttaata 444

                                                                       
Query: 245 atctaacaaatcattctgagtgctaagtctagagaatcacaaactatgatttgccttgaa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 atctaacaaatcattctgagtgctaagtctagagaatcacaaactatgatttgccttgaa 504

                                                                       
Query: 305 taaatatgtctgaggccattgctgtgatgggaaaagtttaagaatcagaaccatgaaggt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 taaatatgtctgaggccattgctgtgatgggaaaagtttaagaatcagaaccatgaaggt 564

                                                                       
Query: 365 gtcttgcatttcaaatctaacatagcgattagtttgtctgtcaaactttgattgccttgt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gtcttgcatttcaaatctaacatagcgattagtttgtctgtcaaactttgattgccttgt 624

                                                                       
Query: 425 cattttggcataggattttaactaacagagtttccttcagcaattgttttttaatgcttt 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 cattttggcataggattttaactaacagagtttccttcagcaattgttttttaatgcttt 684

                                                
Query: 485 ttaatttccctagtgagtgattttatccatattgata 521
           |||||||||||||||||||||||||||||||||||||
Sbjct: 685 ttaatttccctagtgagtgattttatccatattgata 721


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 521
Length of database: 921
Length adjustment: 10
Effective length of query: 511
Effective length of database: 911
Effective search space:   465521
Effective search space used:   465521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no471_c03.g1 MSMg01no471_c03.g1 CHROMAT_FILE:
MSMg01no471_c03.g1 PHD_FILE: MSMg01no471_c03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:48:16 2005
         (148 letters)



>mm_chr4_13101361_13101908
          Length = 548

 Score =  286 bits (148), Expect = 3e-82
 Identities = 148/148 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttggggaattaacagggtcacagtaagtgctataatgagttatatttttatcttcacaac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 ttggggaattaacagggtcacagtaagtgctataatgagttatatttttatcttcacaac 289

                                                                       
Query: 61  aaattaaaaatatctacttggtagacatattgcaaaggttgaagaaaacattattttgta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 aaattaaaaatatctacttggtagacatattgcaaaggttgaagaaaacattattttgta 229

                                       
Query: 121 tgtaatataaatctcatgtgtgtgtgtg 148
           ||||||||||||||||||||||||||||
Sbjct: 228 tgtaatataaatctcatgtgtgtgtgtg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 148
Length of database: 548
Length adjustment: 8
Effective length of query: 140
Effective length of database: 540
Effective search space:    75600
Effective search space used:    75600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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