CCCTTNACACCCCNNTTTCCTTTNCCCCTTTCCCTTTTTTTTTTCTCCTT
TTNNCCCCCCCCTCTCTCCCCTCCTTTCTCCCCTCCCTTCCTCTTTTTTT
TTCCTCTTCTCTTCTCTCCCCCCCCCCAATCCANGCCCNGCCGTTTTTTT
TTCNCTCTTTTNCTCCCCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
CCCCCCNCCTTCCCTTCTCCCCGGNNNNNATCTTCTCNNNTCTCCCCCCC
CTTTTTCCTTTCTCCCGNNNNNNNNNNNNNNNNNNNNNACTTCCTTCCTT
TCTCCGCTTCCCCCNNNNTTCCTCCTCCTNGGGGNGNNNNNTCGCCCCTT
CTCTCCCCCCTTTTCCCCCCTCCCCCCTTTCTTTTTCTTTTTTCCCCCCT
TTCCCCCGCCCTTTTTTTGNCCCCCCCCCCCCCCCCCCCTTAAAATTTTT
TTTCTCCCCCCATAGGGANTTTCCCCCCCCCCTTTTNATAATTTTTCCCC
TCGGGTGAACCTTCCCTTTTTTTCTCCCCCGCACCTTTCCCCCTGGGCCT
CCTTTTCCCCCTTTTTTTCTTTTCCCCCCCCCCCTTCCCTCTTCCCCCTC
CTTTTTTCCCCCCCCTTCTTTTCTTTTTCCCCCTCCTCTTCTTTCCCCTC
CCCCTCTCCCTTTTCCTCTTTTTTCCCCCCTCCCTCCCCCTTCTTCCGCT
CTCCCCCCACCCCTTTTTCTCTTTCTTTCCCCCCCCCTCCCCCCCCCCCC
TTCTCCTTCCTTTCTCTTCTTTTTTCCCG

NCTCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCCTCCCACATTCTTGAACACCTCC
CTTTGCCTGTCTTTGCTCTGAGGTATCTTCTCCCTCGTGGCCATAGGTCA
ACAAATGTGACACCGTCGGATCTCCAGCTTGTCACGGTGGCCTCAGGGGA
GCTGCAACTTCAAGGTTCCCTTCAAGAAACCTGGGCTCCATGTCACCCCA
ACAACCAGCTTTATTAAACTTCGCATAGGGACGCCAGAGAGGTAGGCAGA
GCCCAGGCCAGCCTGCCATATTCAAACGGGGCATTAGAAGCCGCAGTCCT
AGCAGAATCTCAGTCCTCTCCCCCCCACCCATTTCCCTTTCTTCCCTTTT
GCTTCCCCTCCCCTCCCCATCCTCCCACCTCCATTCCTTCCCTTTCTGAC
TGGGCCTTGCTATATAGCCAGGCTCTGGACTCACAATCCTCCTGCCTCAG
CCTCCTGAGTGCTGTGATCCCGGGCACACACCCCACTCCACTCTCAACCA
GCTCCGACGTCCGTTCGTTCCCATTGCATCTTGTTACGCAGCAGTAAATA
TGGCTGCCCAGGTGCTCCCTGGGGCTGTCCATCTCCGCGTCTTTGGTCTG
AAGGCATTCTCAGTGGAATGTCTTGGATCAGTGACAGCCTGGTTCTGGCT
TCCTTTAACAGGTCTCTAATGGTTCTGCTGCCCGCTGGGTT

Query= MSMg01no471_c06.g1 MSMg01no471_c06.g1 CHROMAT_FILE:
MSMg01no471_c06.g1 PHD_FILE: MSMg01no471_c06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:48:17 2005
         (603 letters)



>mm_chr4_139087361_139088363
          Length = 1003

 Score = 1160 bits (600), Expect = 0.0
 Identities = 603/604 (99%), Gaps = 1/604 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   cctcccacattcttgaacacctccctttgcctgtctttgctctgaggtatcttctccctc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 cctcccacattcttgaacacctccctttgcctgtctttgctctgaggtatcttctccctc 259

                                                                       
Query: 61  gtggccataggtcaacaaatgtgacaccgtcggatctccagcttgtcacggtggcctcag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 gtggccataggtcaacaaatgtgacaccgtcggatctccagcttgtcacggtggcctcag 319

                                                                       
Query: 121 gggagctgcaacttcaaggttcccttcaagaaacctgggctccatgtcaccccaacaacc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 gggagctgcaacttcaaggttcccttcaagaaacctgggctccatgtcaccccaacaacc 379

                                                                       
Query: 181 agctttattaaacttcgcataggga-cgccagagaggtaggcagagcccaggccagcctg 239
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 380 agctttattaaacttcgcatagggaacgccagagaggtaggcagagcccaggccagcctg 439

                                                                       
Query: 240 ccatattcaaacggggcattagaagccgcagtcctagcagaatctcagtcctctcccccc 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ccatattcaaacggggcattagaagccgcagtcctagcagaatctcagtcctctcccccc 499

                                                                       
Query: 300 cacccatttccctttcttcccttttgcttcccctcccctccccatcctcccacctccatt 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 cacccatttccctttcttcccttttgcttcccctcccctccccatcctcccacctccatt 559

                                                                       
Query: 360 ccttccctttctgactgggccttgctatatagccaggctctggactcacaatcctcctgc 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 ccttccctttctgactgggccttgctatatagccaggctctggactcacaatcctcctgc 619

                                                                       
Query: 420 ctcagcctcctgagtgctgtgatcccgggcacacaccccactccactctcaaccagctcc 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 ctcagcctcctgagtgctgtgatcccgggcacacaccccactccactctcaaccagctcc 679

                                                                       
Query: 480 gacgtccgttcgttcccattgcatcttgttacgcagcagtaaatatggctgcccaggtgc 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 gacgtccgttcgttcccattgcatcttgttacgcagcagtaaatatggctgcccaggtgc 739

                                                                       
Query: 540 tccctggggctgtccatctccgcgtctttggtctgaaggcattctcagtggaatgtcttg 599
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 tccctggggctgtccatctccgcgtctttggtctgaaggcattctcagtggaatgtcttg 799

               
Query: 600 gatc 603
           ||||
Sbjct: 800 gatc 803


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 603
Length of database: 1003
Length adjustment: 10
Effective length of query: 593
Effective length of database: 993
Effective search space:   588849
Effective search space used:   588849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)