Query= MSMg01no471_f18.b1 MSMg01no471_f18.b1 CHROMAT_FILE:
MSMg01no471_f18.b1 PHD_FILE: MSMg01no471_f18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:48:35 2005
(668 letters)
>mm_chr4_77301943_77303010
Length = 1068
Score = 926 bits (479), Expect = 0.0
Identities = 509/519 (98%), Gaps = 2/519 (0%)
Strand = Plus / Minus
Query: 151 tgtcactaaactctgtggacagtatttacaatgagtctaaaattctagagtgcattataa 210
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1068 tgtcactaaactctgtggacagtatttacaatgagtctaaaattctagagtgcattataa 1009
Query: 211 actcatggagaatgtgatgcaatgtccctcacttggctccacttccagagtttgtgattc 270
||||||||| |||||| |||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 1008 actcatggaaaatgtggtgcaatgtccctcacttggctccacttccagagtttatgattc 949
Query: 271 aatattcctggaagga-aaccaagaatttactcctctagcaagttccagataataactct 329
||||||||||||| || |||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 948 aatattcctggaa-gataaccaagaatttactcttctagcaagttccagataataactct 890
Query: 330 gctgcaggttcagaaaccatatagctggattcagtggtcgaaactgtagtcactgaagct 389
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 889 gctgcaggttcagaaaccatatagctggattcagtggtcgaaattgtagtcactgaagct 830
Query: 390 gaccatgtcacaaatccttccattttagatcactagaaagattttcagtctaggaatgaa 449
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 829 gatcatgtcacaaatccttccattttagatcactagaaagattttcagtctaggaattaa 770
Query: 450 tctgcaatcttatacttcttttcacgtctctgtaatggaaggaagtaaatagtcctttca 509
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 769 tctacaatcttatacttcttttcacgtctctgtaatggaaggaagtaaatagtcctttca 710
Query: 510 gctttccctatgtagattcttaatcagtctcccgaatctccctatttgggcattagaaat 569
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 709 gctttccctatgtagattcttaatcagtctcccgaatctccctatttgggcattagaaat 650
Query: 570 tgtggcactctctatcaagtgacatagtagggaatagaaaggtatcatagaagacagaat 629
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 649 tgtggcactctctatcaagtgacatagtagggaatagaaaggtatcatagaagacagaat 590
Query: 630 aaaattcactctagactaattatgtagctaattactcta 668
|||||||||||||||||||||||||||||||||||||||
Sbjct: 589 aaaattcactctagactaattatgtagctaattactcta 551
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 668
Length of database: 1068
Length adjustment: 10
Effective length of query: 658
Effective length of database: 1058
Effective search space: 696164
Effective search space used: 696164
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no471_f18.g1 MSMg01no471_f18.g1 CHROMAT_FILE:
MSMg01no471_f18.g1 PHD_FILE: MSMg01no471_f18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:48:35 2005
(674 letters)
>mm_chr4_77132203_77133273
Length = 1071
Score = 1162 bits (601), Expect = 0.0
Identities = 653/671 (97%), Gaps = 4/671 (0%)
Strand = Plus / Plus
Query: 1 actttgtagaccaggctggcctcgaactcagaaatccacctgcctctgcctcccgagtgc 60
||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||
Sbjct: 201 actttgtagaccaggctggcctcaaactcagaaatccacctgcctctgcctcccaagtgc 260
Query: 61 tgggattaaaggcgtgggccaccacgcctggctattttgccctttcttgcctatggaagt 120
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgggattaaaggtgtgggccaccacgcctggctattttgccctttcttgcctatggaagt 320
Query: 121 tgccagtaattgttttctcctttacacaactgctgtacatatttctaatctctgtttctt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgccagtaattgttttctcctttacacaactgctgtacatatttctaatctctgtttctt 380
Query: 181 tacaccaaattcagggctttgaagttcagttttcttctaattagatctatctaatgaatt 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 381 tacaccaaattcagggctttgaagttcagttttcttctaattagatctatctaacgaatt 440
Query: 241 ccatttggacagtctaaaggggaagttttcctgattatttccctaattatttccttaatt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccatttggacagtctaaaggggaagttttcctgattatttccctaattatttccttaatt 500
Query: 301 gttgattggctaataaagatggcagaagttaatcattggtcaaaggtatggttgtgggat 360
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 501 gttgattggctaataaagatggcagaagttaatcattggtcaaaggtatggcggtgggat 560
Query: 361 tttctgggcaggacaggaaaagaatgagagtattcgaaatcggatcaagcaagggtagtc 420
||||||| |||||||||||||||||||||||||| |||||||||||| ||||||||||||
Sbjct: 561 tttctggacaggacaggaaaagaatgagagtattagaaatcggatcaggcaagggtagtc 620
Query: 421 gagaagttgtagacatgtagatttctctgggcactgatatagtttgtggactctggaaaa 480
||||||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct: 621 gagaagttggagacatgtagatttctctgggcactgata--gtttgtggcctctggaaaa 678
Query: 481 tggggcaggatagtctttgcccagtctttgagttatctggtcagttttgaaatataaagg 540
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 679 tggggcaggatagtctttgcccagtctttgagttatctggtca-ttttgaaatataaagg 737
Query: 541 tacctgttttgcagcctgataggaagaacaacaatatgaaccaaccagtaacccc-agag 599
|||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 738 tacctggtttgcagcctgataggaagaacaacaatatgaaccaaccagtaacccccagag 797
Query: 600 ctcccaggatctaaaccaccagccatagattacctatttactggagcctcagggctccag 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 798 ctcccaggatctaaaccaccagccatagattacctatttactggagcctcagggctccag 857
Query: 660 ctacatatgta 670
|| || |||||
Sbjct: 858 ctgcacatgta 868
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 674
Length of database: 1071
Length adjustment: 10
Effective length of query: 664
Effective length of database: 1061
Effective search space: 704504
Effective search space used: 704504
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
