TACCACTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTGTTTTTCCTCTAAATTGGCCAATGGAAGGAGCTGTCCACT
GTACCACATGTGGCTTGGGCAGCAGGTACTTTTAAGAGCCCCAGTATTTC
CCCCAGTTGTGTAGCAGATGGATCATTTGTTCATCCCAAGACATAGCTTC
TTGAAATTCTGTCACCTGTCAAAAATTGTCTTGGGACAAAGGATCCATCT
GCTATACACCTGGGAGGAATACTGGGGCCCTCAAAGGTACCTACTGCTCA
AGCCACAGGATCCTTTTTAGAAGGGGAAACAAAATACCCAGGGAAGGAGT
TACAGAGACAAAGTGTGGAGCAGAGACTCAAGGAATGAACATCCAGAGAA
TGCCCCATCTGGGGATCCACCCCAAATATAATCACCAAACACACACCCTA
TTGTGGATACCAACAAGTGCTTGCTGGCAGGAGCCTGATATAGCTGTCTC
CTGAGAGGCTCTGTCAGTGCCTGACAAATACAGAAGTGGATACTCACAGT
CATCCATTGGAATGAGCACAGGGTCCCCAATGAAGGAGCTAGAGAAAGTA
CTGAAGGAGCTGAAGGGGTTTCCAACCTCATAGGAGGAAAAAAAAATATG
AACTAATCAGTACCTCCAGAGCTCCCAAGGACTAAACCACCAACTTAGGA
AAACACATAGGGGGACTCATGGCTCTATCTGCATATGTG

TTTTCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGTTCATGTGGCTTTCTTCT
ATTAGGTTTGTTGAAAGATTACTTTCTTGCCTTTTCTAGGGTGTAGTTTT
ACTCCTCCTGTTGGAGTTTTCCCTTTATTATCATTTGAAGGGCTGGATTT
GTGGAACAATATTGTGCAAATTTGGTTCTGTCGTGGAATACCTTGGTTTC
TCCATCTATGGTAATTGAGAGATTTGCCAAGTATAGTAGCCTGGGCTGGC
ATTTGAGTTCTCTTAGGGTCTGTATGAAATCTACCAAGGATCTTCTGGCT
TTTATAGTCTCTGGAGAGAAGTCTGATTTAATTCTAATAGGTCTGCCTTT
ATATGTTACTTGACCTTTTTCCTTACTTCTTTTCATATTCTTTCTTTGCT
TTGTGCATTTGGTGTTTTGATTATTATGTGAAGGGAGGAATTTATTTTCT
GGTCCAAACTGTAGGTGTTCTGTAGGCTTCGTTTATATTGATGGGCATCT
CTTTCCTTAGATTAGGGATTTTTTTCTTCTGTAATTTTCTTGAAGATATT
TTCTTGCCAGTTAACTTGGAAATCTTCACTCTCTTCTATACCTATTATCC
TTAGGTTTGGTCTTCTCATAGTGTCCTAGATTTCCTGGTTATTTTGGGTT
AGGATTTTTTGCATTTAGCATTTTCTTTGATTGT

Query= MSMg01no471_l04.b1 MSMg01no471_l04.b1 CHROMAT_FILE:
MSMg01no471_l04.b1 PHD_FILE: MSMg01no471_l04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:49:02 2005
         (621 letters)



>mm_chr4_16511583_16512604
          Length = 1022

 Score = 1085 bits (561), Expect = 0.0
 Identities = 603/619 (97%), Gaps = 8/619 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctgtttttcctc-taaattggccaatggaaggagctgtccactgtaccacatgtg 63
           |||||||||||  || | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctgttta-ccacctaaattggccaatggaaggagctgtccactgtaccacatgtg 263

                                                                       
Query: 64  gcttgggcagcaggtacttttaagagccccagtatttcccccagttgtgtagcagatgga 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gcttgggcagcaggtacttttaagagccccagtatttcccccagttgtgtagcagatgga 323

                                                                       
Query: 124 tcatttgttcatcccaagacatagcttcttgaaattctgtcacctgtcaaaaa-ttgtct 182
           || |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 324 tcgtttgttcatcccaagacatagcttcttgaaattctgtcacctgtcaaaaaattgtct 383

                                                                       
Query: 183 tgggacaaaggatccatctgctatacacctgggaggaatactggggccctcaaaggtacc 242
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 384 tgggacaaaggatccatctgctatacagctgggaggaatactggggccctcaaaggtacc 443

                                                                       
Query: 243 tactgctcaagccacaggatcctttttagaaggggaaacaaaatacccagggaaggagtt 302
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tactgctcaagccacaggattctttttagaaggggaaacaaaatacccagggaaggagtt 503

                                                                       
Query: 303 acagagacaaagtgtggagcagagactcaaggaatgaacatccagagaatgccccatctg 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 acagagacaaagtgtggagcagagactcaaggaatgaacatccagagaatgccccatctg 563

                                                                       
Query: 363 gggatccaccccaaatataatcaccaaacacacaccctattgtggataccaacaagtgct 422
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 564 gggatccaccccaaatataatcaccaaacacacaccctattgtggatgccaacaagtgct 623

                                                                       
Query: 423 tgctggcaggagcctgatatagctgtctcctgagaggctctgtcagtgcctgacaaatac 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 tgctggcaggagcctgatatagctgtctcctgagaggctctgtcagtgcctgacaaatac 683

                                                                       
Query: 483 agaagtggatactcacagtcatccattggaatgagcacagggtccccaatgaaggagcta 542
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 agaagtggatgctcacagtcatccattggaatgagcacagggtccccaatgaaggagcta 743

                                                                       
Query: 543 gagaaagtactgaaggagctgaaggggtttccaacctcataggaggaaaaaaaaatatga 602
               |||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 744 ----aagtactgaaggagctgaaggggtttccaacctcataggaggaaaaaaaa-tatga 798

                              
Query: 603 actaatcagtacctccaga 621
           ||||| |||||||||||||
Sbjct: 799 actaaccagtacctccaga 817


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 621
Length of database: 1022
Length adjustment: 10
Effective length of query: 611
Effective length of database: 1012
Effective search space:   618332
Effective search space used:   618332
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)