Query= MSMg01no471_m08.b1 MSMg01no471_m08.b1 CHROMAT_FILE:
MSMg01no471_m08.b1 PHD_FILE: MSMg01no471_m08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:49:08 2005
(527 letters)
>mm_chr4_57867657_57868583
Length = 927
Score = 835 bits (432), Expect = 0.0
Identities = 479/512 (93%), Gaps = 27/512 (5%)
Strand = Plus / Minus
Query: 16 cagccgagaagtcaatctgctcagtgaccacatcctcctttgtgtgttcaatgccatcta 75
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 927 cagccgagaagtcaatctgctcagtgaccacatcctcctttgtgtgttcaatgccatcta 868
Query: 76 ggtgtttgtgagcagctggggctgtgcagggctgggacgtggacagctgctgctgttgca 135
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 867 ggtgtttgtgagcagctggggctgtgcagggctgggacgtggacagctgctgctgttgca 808
Query: 136 gctgttgttgcagctgttgctgttgcagctgttgctgttgcagctgttgctgttgcagct 195
|||||||||||||||||||||||||||||||| |
Sbjct: 807 gctgttgttgcagctgttgctgttgcagctgt---------------------------t 775
Query: 196 gttgttgcagctgttgctgttgcagctgttgctgctgctgctgttgcaactgtatcttct 255
||||||| |||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct: 774 gttgttgtagctgttgctgttgcagctgttgctgctgctgctgttgcaactgtagctgct 715
Query: 256 cctgctgggcccttttctctttgcgttccttgtactttctgtgcgactccagatgttcct 315
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 714 cctgctgggcccttttctctttgcgctccttgtactttctgtgcgactccagatgttcct 655
Query: 316 cgtccagctgctcctcaatagttttctcctggggaggattccaccacttggcggcgatgc 375
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 654 cgtccagctgctcctcaatagttttctcctggggaggattccaccacttggcggcgatgc 595
Query: 376 caggattcttcttcacagcctgactccggatgagctccctccgctctttctccagctcta 435
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 caggattcttcttcacagcctgactccggatgagctccctccgctctttctccagctcta 535
Query: 436 tcatctcctcggaaggcctcactttccggacgcagaactgctctttctcgcgctcgtcct 495
||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 534 tcatctcctcggagggcctcactttccggacgcagaactgctccttctcgcgctcgtcct 475
Query: 496 cctcaaagagcttggagggcttcttgtcctcg 527
||||||||||||||||||||||||||||||||
Sbjct: 474 cctcaaagagcttggagggcttcttgtcctcg 443
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 527
Length of database: 927
Length adjustment: 10
Effective length of query: 517
Effective length of database: 917
Effective search space: 474089
Effective search space used: 474089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no471_m08.g1 MSMg01no471_m08.g1 CHROMAT_FILE:
MSMg01no471_m08.g1 PHD_FILE: MSMg01no471_m08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:49:08 2005
(362 letters)
>mm_chr4_57666090_57666848
Length = 759
Score = 615 bits (318), Expect = e-180
Identities = 350/362 (96%), Gaps = 3/362 (0%)
Strand = Plus / Plus
Query: 1 aggcggtgtcttgcttctttatgattgggtcaatctgaatacgacagggtttaaataaag 60
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aggcagtgtcttgcttctttatgattgggtcaatctgaatacgacagggtttaaataaag 260
Query: 61 cacgaagacttatggcttgggtttgatatgaccattcccctagacatcaagaaaagataa 120
|||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 261 cacgaagacttacggcttgggtttgatatgaccattcccctagacattaagaaaagataa 320
Query: 121 aatcatacgcttttaaaaattgttcacagcctggagcagtgtaggaaattccaggacttt 180
||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 321 aatcatatgcttttaaaaattgttcacagcctagagcagtgtaggaaattccaggacttt 380
Query: 181 agctgcactttctcccacaatgttatttatacaatggaggtgccttggaatggaacgtct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agctgcactttctcccacaatgttatttatacaatggaggtgccttggaatggaacgtct 440
Query: 241 tctgcctttcagaactggtggtggtggtggtgattagatttttcaggatagtttactgag 300
||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||
Sbjct: 441 tctgcctttcagaactggtggtggtggtg---attagatttttcaggatagcttactgag 497
Query: 301 aaggaaagacaaaggaaggagggatgggaggagggaggaagagaggaaaggagagagaga 360
||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| ||||
Sbjct: 498 aaggaaagacaaaggaaggagggatggaaggagagaggaagagaggaaaggagagggaga 557
Query: 361 ga 362
||
Sbjct: 558 ga 559
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 362
Length of database: 759
Length adjustment: 9
Effective length of query: 353
Effective length of database: 750
Effective search space: 264750
Effective search space used: 264750
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
