BAC Information

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BAC

Clone NameMSMg01-471P09
Chromosome4 (Build37)
Map Location 54,300,717 - 54,493,976
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100041197, Slc44a1, Fsd1l, LOC666483, Fcmd, Tal2, LOC435784, Tmem38b, LOC670124, LOC100041280
Downstream geneLOC666901, LOC100041303, LOC384018, EG666920, Zfp462, LOC670211, Rad23b, LOC666953, LOC100041348
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-471P09.T7 (MSMg01no471_p09.b1)MSMg01-471P09.TJ (MSMg01no471_p09.g1)
ACCAG554606AG554607
length738733
length of high quality
(start - end)		687 (52 - 738)644 (78 - 721)
definitionCHROMAT_FILE: MSMg01no471_p09.b1 PHD_FILE: MSMg01no471_p09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:49:24 2005CHROMAT_FILE: MSMg01no471_p09.g1 PHD_FILE: MSMg01no471_p09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:49:25 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(54,300,717 - 54,301,398)(54,493,333 - 54,493,976)
sequence
NNNNAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCCTGGTTATCATCAACATCCCACTGCTCTGTGGCTTTCAT
TATTTCTGAGGAGAAATAAGCAACCCCAGTGTGTAGTACTAGGCCTCTGA
ACTTACTGGCTCTTTCTTTCTAGAAGTTTCTAGGATTTTTTAATCACTTG
GTTTCAGAATTCAGTGTAATTTCTTATGATATTGAGCACGTGCAAACACA
CACACACACACACACACACACTGCTCAGAATTCCTTGAATTTCTTGTATT
TGTAAATTGAGTATTTTTCTTAATTTGAAATATTTTATACCACTGTTTTG
GATATTTTTTATTTGTTTCCTCCTCTTTTACTTATTTTTAGAATCTTAAT
TCTAAGGAACCAATACTTCCTTTTTTCCATTTAATTATCTCCCTGTCTTT
TTCTTAATTTTTCTATTCATCTACTTTTAGTTCATTTCTCCCCATTATTT
TTTGTACTTTCAGTTAAACTTTTCATTTAATTTTACTATTCCTTTGCTGG
TACCTCTGTATAAGGTTTAACTGTGAAGTTTCCCCCATAGGCCTATGTAT
TCAAATATGTTATCCAGTTGGTGGCACTGTTTCTGGAGGCTATGGAGTCA
GGGATTTAGGAAGTGGGTCAGTAGGGCAGGTATTTAGTGTTATAGACCAG
TTCTGCTTCCAGCTCACTCAACAATTAATCTATCAAAA

TTTAACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTGGACTATTTAGGAAGGCATGT
GTGATGTTGTAGACTTGCTTCTCCTGAGCGTCCATGACAAATCAAATGAC
ACAGATGAGATCTAAAGTGAAGTGGCACTTATCTATCTACTCCATGGACC
TTTAGTCATCATTTCAGTGCGTGCTTCTGTGTACGTACAGAGTCATGTAT
CCTGAGATTTCAGTAGAAGTTTTAGAGAATCTGTCTACCTCTGATTTTAA
TCTAGAATCTCCCTGCCAAGTGCTAGCCAAGCGGACCCTGTATATACACA
CATACAAACTTGACATTATTGTACAACACAGCAGACAGCTCTCTGGGCAT
GCAGACACTGGCAATTGCCCATGGTTTTATTTCCCCAGGTACGTAGTGTA
ACACAGCCACTGCCTGACAGATCTAATCACAGACAGAGTCTCTTTCTCAG
TCACCCCAGAGTGAAAGCTCAGCGTGTTCCCAAGGAAATGACTGGAACAT
ACAAATCAATTGCCCTTTGCTTCTCTCTCTTTTTTTGACCCCATTTTGAA
TACAAGTATGAGGTTTGATAACAGTACCAAGAAAGGAGGTGGATTTCACA
CGCCCGGGGACTCATCAAAGGGAAGAAAGACTACACAAAGATAGAAACAT
TCAGCCTTGCGCCAGCCTCAAAGATTACCCCAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no471_p09.b1 MSMg01no471_p09.b1 CHROMAT_FILE:
MSMg01no471_p09.b1 PHD_FILE: MSMg01no471_p09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:49:24 2005
         (687 letters)



>mm_chr4_54300513_54301599
          Length = 1087

 Score = 1311 bits (678), Expect = 0.0
 Identities = 681/682 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcctggttatcatcaacatcccactgctctgtggctttcattatttctgaggagaa 64
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcctggatatcatcaacatcccactgctctgtggctttcattatttctgaggagaa 264

                                                                       
Query: 65  ataagcaaccccagtgtgtagtactaggcctctgaacttactggctctttctttctagaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ataagcaaccccagtgtgtagtactaggcctctgaacttactggctctttctttctagaa 324

                                                                       
Query: 125 gtttctaggattttttaatcacttggtttcagaattcagtgtaatttcttatgatattga 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gtttctaggattttttaatcacttggtttcagaattcagtgtaatttcttatgatattga 384

                                                                       
Query: 185 gcacgtgcaaacacacacacacacacacacacacactgctcagaattccttgaatttctt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gcacgtgcaaacacacacacacacacacacacacactgctcagaattccttgaatttctt 444

                                                                       
Query: 245 gtatttgtaaattgagtatttttcttaatttgaaatattttataccactgttttggatat 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gtatttgtaaattgagtatttttcttaatttgaaatattttataccactgttttggatat 504

                                                                       
Query: 305 tttttatttgtttcctcctcttttacttatttttagaatcttaattctaaggaaccaata 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tttttatttgtttcctcctcttttacttatttttagaatcttaattctaaggaaccaata 564

                                                                       
Query: 365 cttccttttttccatttaattatctccctgtctttttcttaatttttctattcatctact 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 cttccttttttccatttaattatctccctgtctttttcttaatttttctattcatctact 624

                                                                       
Query: 425 tttagttcatttctccccattattttttgtactttcagttaaacttttcatttaatttta 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tttagttcatttctccccattattttttgtactttcagttaaacttttcatttaatttta 684

                                                                       
Query: 485 ctattcctttgctggtacctctgtataaggtttaactgtgaagtttcccccataggccta 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ctattcctttgctggtacctctgtataaggtttaactgtgaagtttcccccataggccta 744

                                                                       
Query: 545 tgtattcaaatatgttatccagttggtggcactgtttctggaggctatggagtcagggat 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 tgtattcaaatatgttatccagttggtggcactgtttctggaggctatggagtcagggat 804

                                                                       
Query: 605 ttaggaagtgggtcagtagggcaggtatttagtgttatagaccagttctgcttccagctc 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 ttaggaagtgggtcagtagggcaggtatttagtgttatagaccagttctgcttccagctc 864

                                 
Query: 665 actcaacaattaatctatcaaa 686
           ||||||||||||||||||||||
Sbjct: 865 actcaacaattaatctatcaaa 886


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 44
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 687
Length of database: 1087
Length adjustment: 10
Effective length of query: 677
Effective length of database: 1077
Effective search space:   729129
Effective search space used:   729129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no471_p09.g1 MSMg01no471_p09.g1 CHROMAT_FILE:
MSMg01no471_p09.g1 PHD_FILE: MSMg01no471_p09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:49:25 2005
         (644 letters)



>mm_chr4_54493133_54494176
          Length = 1044

 Score = 1245 bits (644), Expect = 0.0
 Identities = 644/644 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttggactatttaggaaggcatgtgtgatgttgtagacttgcttctcctgagcgtccatga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 844 ttggactatttaggaaggcatgtgtgatgttgtagacttgcttctcctgagcgtccatga 785

                                                                       
Query: 61  caaatcaaatgacacagatgagatctaaagtgaagtggcacttatctatctactccatgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 784 caaatcaaatgacacagatgagatctaaagtgaagtggcacttatctatctactccatgg 725

                                                                       
Query: 121 acctttagtcatcatttcagtgcgtgcttctgtgtacgtacagagtcatgtatcctgaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 724 acctttagtcatcatttcagtgcgtgcttctgtgtacgtacagagtcatgtatcctgaga 665

                                                                       
Query: 181 tttcagtagaagttttagagaatctgtctacctctgattttaatctagaatctccctgcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 tttcagtagaagttttagagaatctgtctacctctgattttaatctagaatctccctgcc 605

                                                                       
Query: 241 aagtgctagccaagcggaccctgtatatacacacatacaaacttgacattattgtacaac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 aagtgctagccaagcggaccctgtatatacacacatacaaacttgacattattgtacaac 545

                                                                       
Query: 301 acagcagacagctctctgggcatgcagacactggcaattgcccatggttttatttcccca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 acagcagacagctctctgggcatgcagacactggcaattgcccatggttttatttcccca 485

                                                                       
Query: 361 ggtacgtagtgtaacacagccactgcctgacagatctaatcacagacagagtctctttct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 ggtacgtagtgtaacacagccactgcctgacagatctaatcacagacagagtctctttct 425

                                                                       
Query: 421 cagtcaccccagagtgaaagctcagcgtgttcccaaggaaatgactggaacatacaaatc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 cagtcaccccagagtgaaagctcagcgtgttcccaaggaaatgactggaacatacaaatc 365

                                                                       
Query: 481 aattgccctttgcttctctctctttttttgaccccattttgaatacaagtatgaggtttg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 aattgccctttgcttctctctctttttttgaccccattttgaatacaagtatgaggtttg 305

                                                                       
Query: 541 ataacagtaccaagaaaggaggtggatttcacacgcccggggactcatcaaagggaagaa 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 ataacagtaccaagaaaggaggtggatttcacacgcccggggactcatcaaagggaagaa 245

                                                       
Query: 601 agactacacaaagatagaaacattcagccttgcgccagcctcaa 644
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 agactacacaaagatagaaacattcagccttgcgccagcctcaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 644
Length of database: 1044
Length adjustment: 10
Effective length of query: 634
Effective length of database: 1034
Effective search space:   655556
Effective search space used:   655556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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