Query= MSMg01no472_i18.b1 MSMg01no472_i18.b1 CHROMAT_FILE:
MSMg01no472_i18.b1 PHD_FILE: MSMg01no472_i18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:50:13 2005
(527 letters)
>mm_chr4_69499724_69500649
Length = 926
Score = 884 bits (457), Expect = 0.0
Identities = 505/521 (96%), Gaps = 5/521 (0%)
Strand = Plus / Plus
Query: 9 gaattccttccga-ttcctaccgggactcagagggggcttctctggtaagggacctcctg 67
||||||||||||| || ||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 209 gaattccttccgagtt-ctaccgggactcagagggggcgtctctggtaagggacctcctg 267
Query: 68 agagggggtttataggataacacagcttcaccgaaaggtggggaaaggaagattgagccc 127
||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct: 268 agagggggtttataggataacacagcttcacagaaaggtggggaaaggaagactgagccc 327
Query: 128 cgcagcaaattccaaagccctgcaggcttatccctggatggatcaggggcctagtttgtg 187
|||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 328 cgcagcaaattcaaaagccctgcaggcttatccctggatggatcagggacctagtttgtg 387
Query: 188 cagagaataaaattagtaggaacaaagggtttaacacctaagcatcaggaaaaggtattc 247
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 388 cagagaataaaattagtaggaacaaagggtttaacacccaagcatcaggaaaaggtattc 447
Query: 248 agccatcattgtgcacacagcagggagcctctc-ggtcctctaagcagataggtggcatc 306
||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct: 448 agccatcattgtgcacacagcagggagcctctccgg-cctctaagcagataggtggcatc 506
Query: 307 gtcaggctgaggtttatttagctggttcagttgaaggagaccaagttgaggaggagaatt 366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 gtcaggctgaggtttatttagctggttcagttgaaggagaccaagttgaggaggagaatt 566
Query: 367 agcataaaggggcttctgccagggcgagtgacagactagcacaccataatgtgcccctgc 426
| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 aacattaaggggcttctgccagggcgagtgacagactagcacaccataatgtgcccctgc 626
Query: 427 ttaacttttcccgtggatctacaatcccacagcccaaagactgtgatgaagctgcatgat 486
|||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 627 ttaacttttcccatggatctgcaatcccacagcccaaagactgtgatgaagctgcatgat 686
Query: 487 atctgtttttgttaatatcatctttttttaaacatacagtc 527
||||||||||||||||||||||||||| ||||||||||||
Sbjct: 687 ctctgtttttgttaatatcatctttttt-aaacatacagtc 726
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 527
Length of database: 926
Length adjustment: 10
Effective length of query: 517
Effective length of database: 916
Effective search space: 473572
Effective search space used: 473572
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no472_i18.g1 MSMg01no472_i18.g1 CHROMAT_FILE:
MSMg01no472_i18.g1 PHD_FILE: MSMg01no472_i18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:50:13 2005
(407 letters)
>mm_chr4_69670709_69671515
Length = 807
Score = 752 bits (389), Expect = 0.0
Identities = 405/413 (98%), Gaps = 6/413 (1%)
Strand = Plus / Minus
Query: 1 tagaaatactcttaaaatacacacacacacacacacacacacacacacacacacacacac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tagaaatactcttaaaatacacacacacacacacacacacacacacacacacacacacac 626
Query: 61 acacacacaca-----a-aatctaaaacagaaaagggatttttgtgggcatggtgttagg 114
||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 acacacacacacacacacaatctaaaacagaaaagggatttttgtgggcatggtgttagg 566
Query: 115 aaagttttgaaatcaatataaaggtcagagaactaagatcaggagccaaatgaagcacaa 174
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 aaagtcttgaaatcaatataaaggtcagagaactaagatcaggagccaaatgaagcacaa 506
Query: 175 agtaaattcagtcaagcaacacaccaacctttcaacctctggtctcctgctttcccgaca 234
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 agtaaattcagtcaagcaacacaccaacctttcaacctctggtctcctgctttcccgaca 446
Query: 235 caaaccattgttgttcttggacattgtttctatgccttacccatcttgtttttatggaaa 294
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 caaaccattgttgtccttggacattgtttctatgccttacccatcttgtttttatggaaa 386
Query: 295 gtgttgtccctcgtctccagctgacacttagccctgcaaggacctgggaagaaagtctat 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gtgttgtccctcgtctccagctgacacttagccctgcaaggacctgggaagaaagtctat 326
Query: 355 tttcactcaggccttatggtgtaggtcttaaggtatatttggtgttagtcatc 407
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tttcactcaggccttatggtgtaggtcttaaggtatatttggtgttagtcatc 273
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 87
Number of extensions: 30
Number of successful extensions: 29
Number of sequences better than 10.0: 1
Number of HSP's gapped: 22
Number of HSP's successfully gapped: 1
Length of query: 407
Length of database: 807
Length adjustment: 9
Effective length of query: 398
Effective length of database: 798
Effective search space: 317604
Effective search space used: 317604
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
