BAC Information

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BAC

Clone NameMSMg01-472L02
Chromosome4 (Build37)
Map Location 16,956,304 - 16,956,642
singlet/doubletsinglet
Overlap genenone
Upstream geneRipk2, LOC667150, LOC383994, LOC100040154
Downstream geneLOC667212, LOC100040173, Mmp16
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-472L02.T7 (MSMg01no472_l02.b1)MSMg01-472L02.TJ (MSMg01no472_l02.g1)
ACCAG555166AG555167
length758778
length of high quality
(start - end)
247 (73 - 319)350 (77 - 426)
definitionCHROMAT_FILE: MSMg01no472_l02.b1 PHD_FILE: MSMg01no472_l02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:50:25 2005CHROMAT_FILE: MSMg01no472_l02.g1 PHD_FILE: MSMg01no472_l02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:50:25 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCCGC
GGAATTCTTTGTTTACTTCAGAGCCCCATTTTTTAATGGGGTTGTTCGAT
TTTCTGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGCCC
CCTATCTGATTTAGGATAGGTAAAGATGATTTCCCAATCTGTTGGTGGTC
TTTTTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTC
ATTAGGTCCGATTTGTCAATTCTCGATCTTACAGCACATGCCATTGCTGT
TCTGTTCAGGAATTTTTTTTTTTTGTCCATATCTTCGAGGCTTTTCCCCA
CTTTCTCCTCTATAAGTTTCAGTGTCTCTGGNTTTATGTGAAGTTCTTTG
ATCCACTTAGATTTGACCTTAGTACAAGGAGATAAGTATAGATTGATTCG
CATTCTTCTACATGATAACAACCTGTTGTGCCAGCACCAATTGTTGAAAA
TGCTGTCTTTCTTCCACTGGATGGTTCTAGCTCCCTTGTTGAAGATCAAG
TGACCATAGGTGCGTGCCTTCATTTCCTGGTTCTTCTAATTCTATTCCAT
TGGTCTATTTCGTCTTGTCTCTATTACCACTACCATGCACCTTTTACCTC
ATTTGCTCTGTATTTTAGCTTTTTATCCCGGTCTGTTGAATCCCCCTTAT
GGTTCTTTTTCCCCGAGATTAACCCTTTGCCATCTTATCCCTTCCTTCTC
CTTCTAAN
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTAACTTGAGTATTTTTTATGATTA
CAATAGACATTTTTAAAATTTACTGTTTATATTTTCTTGCACAATGAATA
TAAATACTTCTTTCATGGCACAGGCTAAAAACTTATGTGGACTTTTGTTA
ATGAAATGAAAAATATACTTTTGTATTGAAATTGTAAGTGGTCTATTCTT
TGTGATTTTTAACACATGAATTAACTCCAAATAGCCATTTGTGTGTGTGT
GTGTGTGTGTGTGTGTTTGTGTGTGTGTGTATAATCAAATACTACTTTTC
ACAATACATATAGGATTAATGTCTAAAATAGTGTGATTCAAGTAATTTTC
TATGGATAACAATTGCCTTATTTATTTGTGGAACAGTAGTTTACTTATCT
GGGTTATCCGATTTTCTATATAACTAATTGCTAGGCTGTTTGCTGTGTAT
TGTGGATGTAAATGTCTCCTATCTATATGCCCCTTTGGATTCGCTCCCCT
CTTGTTCTGCACCATTACTTATTCCACATCTTGCAGGCCTTCTGCATATT
CTCATGCCCCTCTACATCATTTTTTCCTTGTCTCCTGCCCCCTCCGGTCG
CCCTCTCATCTTCTTTCCCACTCTATATTTTTCACCGCCCTTCTCCAATA
TCCTTATTCGACTACCTCCCACTATACCACCCACTATAAACTAAACACCG
AATTTCTTCCACCCCTTTCTTTCTCCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no472_l02.g1 MSMg01no472_l02.g1 CHROMAT_FILE:
MSMg01no472_l02.g1 PHD_FILE: MSMg01no472_l02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:50:25 2005
         (350 letters)



>mm_chr4_16956104_16956853
          Length = 750

 Score =  572 bits (296), Expect = e-168
 Identities = 332/350 (94%), Gaps = 11/350 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   taacttgagtattttttatgattacaatagacatttttaaaatttactgtttatattttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 taacttgagtattttttatgattacaatagacatttttaaaatttactgtttatattttc 260

                                                                       
Query: 61  ttgcacaatgaatataaatacttctttcatggcacaggctaaaaacttatgtggactttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgcacaatgaatataaatacttctttcatggcacaggctaaaaacttatgtggactttt 320

                                                                       
Query: 121 gttaatgaaatgaaaaatatacttttgtattgaaattgtaagtggtctattctttgtgat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gttaatgaaatgaaaaatatacttttgtattgaaattgtaagtggtctattctttgtgat 380

                                                                       
Query: 181 ttttaacacatgaattaactccaaatagccatttgtgtgtgtgtgtgtgtgtgtgtgtgt 240
           ||||||||||||||||||||||||||||||||||||| ||||||||||||          
Sbjct: 381 ttttaacacatgaattaactccaaatagccatttgtgagtgtgtgtgtgt---------- 430

                                                                       
Query: 241 ttgtgtgtgtgtgtataatcaaatactacttttcacaatacatataggattaatgtctaa 300
           || ||||||||||||||||||||||||| |||||||||||||| | |||| |||||||||
Sbjct: 431 ttatgtgtgtgtgtataatcaaatactagttttcacaatacattt-ggatcaatgtctaa 489

                                                             
Query: 301 aatagtgtgattcaagtaattttctatggataacaattgccttatttatt 350
           |||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct: 490 aatagtgtgattcaagtatttttctatggataacaattgtcttatttatt 539


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 350
Length of database: 750
Length adjustment: 9
Effective length of query: 341
Effective length of database: 741
Effective search space:   252681
Effective search space used:   252681
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)