BAC Information

Click to search

BAC

Clone NameMSMg01-472P17
Chromosome4 (Build37)
Map Location 149,304,955 - 149,305,198
singlet/doubletsinglet
Overlap geneSpsb1
Upstream geneCasz1, Pex14, LOC670864, Dffa, Cort, Apitd1, LOC666774, Pgd, Kif1b, LOC100041794, Ube4b, Rbp7, LOC627985, Nmnat1, Lzic, Ctnnbip1, Clstn1, Pik3cd, D4Ertd429e, Slc25a33
Downstream geneH6pd, Gpr157, Slc2a5, LOC435818, Car6, LOC100041882, Eno1, LOC666880, LOC384091, Rere, Slc45a1, LOC677027, Errfi1, Park7, Tnfrsf9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-472P17.T7 (MSMg01no472_p17.b1)MSMg01-472P17.TJ (MSMg01no472_p17.g1)
ACCAG555388AG555389
length818743
length of high quality
(start - end)
244 (73 - 316)244 (72 - 315)
definitionCHROMAT_FILE: MSMg01no472_p17.b1 PHD_FILE: MSMg01no472_p17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:50:49 2005CHROMAT_FILE: MSMg01no472_p17.g1 PHD_FILE: MSMg01no472_p17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:50:49 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTGTTTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCAGCGTTCCCAGGAAGGCAGTAAAGATGCAATCACTGTGA
ACAGCTAACATTCCCTTTGGGGAGAGTGCAGAGCTGACATGGGGCTGAGA
CACAGAGGATGCAGAGAAACTACATTGGTAAGAGGCTGGGGAGTCTGACC
AGTGGGAACAGGAAGTGTGAAGGCCCTAAGGTGGAAGGAAGCTGGGATTA
CGTAAGAGGTAGAAAGACAGAGGCCAGTGTGGCTGAAGCCTGGTGAGTTG
GGGGTTTGAAGGGTGTATTTTTTTTTTNNNNNNNNNNNNGTNTGGNGTTG
TTTGTGTTGTTTTTTTTTTCCCCTCCCTCCTTGGTCTGGTGTCCGTCCCT
TTGTTTTTTGCCTTTTCTTGGTTCTCCCCCTTTCTCTTGTGTTCTCCCCT
TTCTTGTTTCTCTCTTCTCCTCCTTTTTTTTCTCTCTTTTTTCTCCGTTT
CGCTCTCCTTTCTTTGCCCTATTTTTTCTCTCTTTTTGTCCTTCCCTTCT
TTAGTTTTTTTTTCTTCTTGACTGTTTCTTTTATTTCCGTTCCTTCTCTT
CCCCCGCTTGCGTTATATACACTTTTCTCTACTTTCCACTTGTTTTCCTT
CTTCCCTTCCCACTCCTTTCTCCGCCATTCTCCCCGCTTTTTTTTTTCCC
TTATCTCTTCCTCTCTTCACTACCCGTCTGTTCCCAACTATCTATATATT
CCTCCACTTCCTTGTATACTTGTTTCGCGTTCTTCCGCCCTCTCTATACC
TTCTTTTTCCTTGTATTN
NNGGCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXTTTCACGCGGAATTCTGGTGCCAATGAAGCTCTGGGTTG
TGAAGAGAATGGGTGTCTGGGAGTATCCTAAGACGTTTGGGGTGTATCTT
ATGGGCAAGGACAGGCCAGACCCAGAGAAAAGGGAGCAGTGGGCAGAGCA
GCTGACAGCTGGGTCACGCCTCTCTGCTTTGCCTGCAGCTAGTCCTCCCG
CTGGAGCCTGGTCCTGGAAGACCCAAGTTTGGGAGACAGTTTAGCCATTA
CCTAAGGTCTCAATCTTTTATTCTATCAATCAATCAATCAATCAATCAAG
GGCCAGCAAGCTTTACAGGCTGGAAAAGGAGACACAAGGTTGTTCATCAC
CTGGCAATGGTGGTACACTGCAGAGGGCAGCCGTTTGTAACTAACAGGTC
CACCGGCCCACTGCGTTCTGGAGAGGCACTTTTACTGCTCAAGTACCAGG
AGTGGAACTTTCGGGTTGATTGCCAGTTCGTTTCCCTATTCAAACCATGT
GGTGCTAGCTCCTTGACTCTTCCAGTGGAGGCTGGATCTGTCTGGGCTCT
ATAAATCTGGCATATTTACAGGGGATGCTCATTTTAAATTGGGGTTTTCC
TTTTCTCTTTAGTATGAAAATCTCTTGGCTGCTAGCCTGTTTTGCCTGCT
GGAATTTCTTTTTTCTTTTCCCCTTTCCCCCCTTCCTTGGGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no472_p17.g1 MSMg01no472_p17.g1 CHROMAT_FILE:
MSMg01no472_p17.g1 PHD_FILE: MSMg01no472_p17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:50:49 2005
         (244 letters)



>mm_chr4_149304755_149305398
          Length = 644

 Score =  456 bits (236), Expect = e-133
 Identities = 242/244 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aattctggtgccaatgaagctctgggttgtgaagagaatgggtgtctgggagtatcctaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 aattctggtgccaatgaagctctgggttgtgaagagaatgggtgtctgggagtatcctaa 385

                                                                       
Query: 61  gacgtttggggtgtatcttatgggcaaggacaggccagacccagagaaaagggagcagtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 384 gacgtttggggtgtatcttatgggcaaggacaggccagacccagagagaagggagcagtg 325

                                                                       
Query: 121 ggcagagcagctgacagctgggtcacgcctctctgctttgcctgcagctagtcctcccgc 180
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ggcagagcagctgacagctgagtcacgcctctctgctttgcctgcagctagtcctcccgc 265

                                                                       
Query: 181 tggagcctggtcctggaagacccaagtttgggagacagtttagccattacctaaggtctc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tggagcctggtcctggaagacccaagtttgggagacagtttagccattacctaaggtctc 205

               
Query: 241 aatc 244
           ||||
Sbjct: 204 aatc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)