NNNAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCANAGAG
ATCCGCGGAATTCTACCTGGTGAGTTCCAGACTATCTAAGGCCTCACAAA
TTTTGAGAAATCCTACCAACTTGTACTTTTTCTTTGAGAAAAATGGGCCT
TTGTGATNNGGCTGAATTGTCAATNNTTAACGGGAATTTGGGGTCCGTCA
TGGGAAACTGGTAGCCCTCTGGGTTGTGNNTCTACAAGGGTGGTTTGCAA
AGAAAGGTGGAANACTGAGGAGAGANANNAACNCNCANCNTGGNTANCNN
TGGGNCNTGTGTTNTNTNTGAAGTGGTNNCAACTTGGGATATAAATGCAG
GGAATTAATCACAGAAGAAAAGGGAAGCCCTCCCCTTTGGANGGAAAATT
GTTTTTCTTTTTATAATTCCAGGCTGGTAAGGGGAATTTTTTTTCTCCAA
ATTAAAGGGAATCCACAGAAAAGGGGCGAAGAGGGGCCCCCAATTTGTGG
GGGGTGTGGGGGGTGGCCTATATTCGCCCCTTGGGGGCGCTCTGTGGGTT
GGGGCTCCCCCCTGGGGGGTGNNNNNNTTGGATGATAAGAAGTGNCAAGT
TGGAGAATAAAATCTCCCCGGGCGAAAATAGCCAATACTCCCCCCTATAA
TATAAGGAACACATTATTCCTCTCCCCTCTCATGTGGGTCTCCCCCCTCC
GGCGNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTGGATGTCNCTTGTTA
AAGNNNNNNNNNNNNTGAGTGAGGTGATTGAGTNTATGGNNNNNTCTTTN
NNNNNNNNNNNAATAGTGTTCTGTGTTGTGTGGGTGGGTGTCATTCTACA
CCTGTGTTGGTTTGTTGTAAATNCTATNCTCTTATCTGTTTTTGTGTTTT
ACAAAAATTATCCCTCCCTCNCNNTATCCGTCTCATCCATNCATAAATAA
ATTGTATTTATTTCGG

NNNAACAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXACTCAGAATTTTCTCCAGTCC
AGGTGTCTGGGGTATACACTTAAAGGGCTCAGAGGAGGAGGATACAGGAA
AGTGGGGAGGGAGTTTCTATCACAACCGACAGAAATGCATTAGTCTGTGC
ACAAGAATGGCTATGTGTCATGAGAATTGGCTGGTAGGTGCACTACAAAC
TAGATACACACCCAAGAAGGCAGCTGCCCAGCTCTTGTGCTGCTTACAGC
TTATTGTAAATATAAAGGTTGTGCGTGTGTCTTTTATCAGGGAACTCAAT
AATCAAGGAGGGGTAGAAACCCGGGCTGGAGTTTTAATACATTCTATTAC
ATGTGCCTTCATCTCCCCACCGAGGCCTTCACATCCTTGTTTGTGAGCAT
TTGTACATTTACATGTATGATGAAGCTGTACTATATAGCTGTTCTGCTTT
TAAAATAAAGTATCCATTACAGATCTGTAAGGAAGAGCAGAGTCAACATC
AAGTGTCTTCCTCTGTCCCTCCTCACCTTATATTTTGAGGCAGTGTCTCT
CACTGAACCCAGAGTTCATGGTCTCAAGCCAGACTGGCTGGCCAGTAACT
CCCATGTGTCCATCTGTCTCTGTACTTCTGCCCCTCTCAAAACTGGGAGT
AAGGGTGCAAAACTGCCCTGCCCAGTTTCACGGTTGGTGGAAGCN

Query= MSMg01no473_l04.g1 MSMg01no473_l04.g1 CHROMAT_FILE:
MSMg01no473_l04.g1 PHD_FILE: MSMg01no473_l04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:51:53 2005
         (557 letters)



>mm_chr4_152057436_152058392
          Length = 957

 Score =  926 bits (479), Expect = 0.0
 Identities = 548/605 (90%), Gaps = 52/605 (8%)
 Strand = Plus / Minus

                                                                       
Query: 5   agaattttctccagtccaggtgtctggggtatacacttaaagggctcagaggaggaggat 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 953 agaattttctccagtccaggtgtctggggtatacacttaaagggctcagaggaggaggag 894

                                                                       
Query: 65  acaggaaagtggggagggagtttctatcacaaccgacagaaatgcattagtctgtgcaca 124
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 893 ccaggaaagtggggagggagtttctatcacaaccgacagaaatgcattagtctgtgcaca 834

                                                                       
Query: 125 agaatggctatgtgtcatgagaattggctggtaggtgcactacaaactagatacacaccc 184
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 833 ggaatggctatgtgtcatgagaattggctggtaggtgcactacaaactagatacacacac 774

                                                                       
Query: 185 aagaaggcagctgcccagctcttgtgctgcttacagcttattgtaaatataaaggttgtg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 773 aagaaggcagctgcccagctcttgtgctgcttacagcttattgtaaatataaaggttgtg 714

                                                                       
Query: 245 cgtgtgtcttttatcagggaactcaataatcaaggaggggtagaaacccgggctggagtt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 713 cgtgtgtcttttatcagggaactcaataatcaaggaggggtagaaacccgggctggagtt 654

                                                                       
Query: 305 ttaatacattctattacatgtgccttcatctccccaccgaggccttcacatccttgtttg 364
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 653 ttaatacattctactacatgtgccttcatctccccaccgaggccttcacatccttgtttg 594

                                                                       
Query: 365 tgagcatttgtacatttacatgtatgatgaagctgtactatatagctgttctgctttt-- 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  
Sbjct: 593 tgagcatttgtacatttacatgtatgatgaagctgtactatatagctgttctgcttttaa 534

                                                                       
Query: 423 --------------------------------------------------aaaataaagt 432
                                                             ||||||||||
Sbjct: 533 aataaagtatcaaatgtaaatgagctaaatacctaataaaaaatggaaaaaaaataaagt 474

                                                                       
Query: 433 atccattacagatctgtaaggaagagcagagtcaacatcaagtgtcttcctctgtccctc 492
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 atccattacagatctgtaaggaagagcagagtcaacatcaagtgtcttcctctgtccctc 414

                                                                       
Query: 493 ctcaccttatattttgaggcagtgtctctcactgaacccagagttcatggtctcaagcca 552
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 ctcaccttatattttgaggcagtgtctctcactgaacccagagttcatggtctcaagcca 354

                
Query: 553 gactg 557
           |||||
Sbjct: 353 gactg 349


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 557
Length of database: 957
Length adjustment: 10
Effective length of query: 547
Effective length of database: 947
Effective search space:   518009
Effective search space used:   518009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)