BAC Information

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BAC

Clone NameMSMg01-474F08
Chromosome4 (Build37)
Map Location 82,606,202 - 82,606,439
singlet/doubletsinglet
Overlap geneFrem1
Upstream geneLOC100040164, EG545641, Nfib, Zdhhc21, Cer1
Downstream geneLOC667985, 1810054D07Rik, Snapc3, Psip1, LOC100040611, 4930473A06Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-474F08.T7 (MSMg01no474_f08.b1)MSMg01-474F08.TJ (MSMg01no474_f08.g1)
ACCAG556420AG556421
length747754
length of high quality
(start - end)
486 (71 - 556)240 (74 - 313)
definitionCHROMAT_FILE: MSMg01no474_f08.b1 PHD_FILE: MSMg01no474_f08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:52:45 2005CHROMAT_FILE: MSMg01no474_f08.g1 PHD_FILE: MSMg01no474_f08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:52:45 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAGGGATTTCAAAGAGTGGAAAAATTTGAATGTCATGTCGAGCTGG
TATCGGCTTCTGGAATACCGAAAGGATCTCTCATCTTGGCTCCATCCTTT
GTGCTTGTGGGATCATCCACCACATCCACAGGGGCAACTGGATCAGGAGC
CTCATTCTTGCAGCGTCTCACCAATCTCTCTGGCACCCAAAGAGGTTCCG
TCTGGTCCTGTGGAAACACACAAACAGACCCTCTCGCCCACATCAACACC
TGATCCGGTCGATCCCCAGTGGAGATGGACACAATACCTCGTGGTGATGA
GACCATAACCTCAATCACCTGTGTGTTCATCTGGGGAGTCAATACGCCAA
ATCTCCGGACAGAAGGTCCGCCTATAGGTGGCTGCTGAGGAGGCATAGGG
AGGAGGCGCAGAAGCTAATTCGCCTTCCTCCTCTGCCTCGGCTCTTTTGT
TTAGTCCTTTCTGACCAGCTGATAACACTGTGTCTCCTTTCTTTTTCCTT
TTTCTTTTTAAGCCCTTCTCCTCTTCCGACATACTTTTCTTGTTGCTCCG
GAAAGATTTTCCTGACCTGCCTTGACTGCCTCTACACCCAGTTTCCAAAA
GTAACCGAAGTCTTATTTTCGTAACTAACAAGACCTAATTTTTTTTGACC
CACCCTCCCATGGGCCCACGGGGTGAAAAAAAATTTTANCTCCCCCT
CCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTGTTAGCCCAGGACTGGCAACTTCCC
TGATAAGAGTGGGGAAGATGAATCACAGCATTCTAGAGGACTAATGAGTC
AGGTGATTGAGGCTTTTCAAGATCATTGCTATCTTCTATAAGATGAAAGA
TAGCCTCAAATCACTACTTGATAAGGTTGGTAGGAGCAGTGTCAGGATTA
CATGACAGCGAAGACAAGTACCACAGTCTGGGTTGCCTTAAAGGGGATGC
TGGGATAAAAGACTGTGTTTCAAGTAATTTATATAGAAAGGGATCCCAGA
AGTATAAAGATGGGAGCCAGTGAGAAGGGAAAGGCGTAGCAGTGACTGTT
TTACTCTGGAGCATTTTTACATGTCTTTCTTGTAACAATCATATGATAAG
AGTGATAGCATCATCCCCATCCACTTTCATACATACTTCATAATTAGAAG
CTAGGGTCCGGATAGGAGGAAGAAGCCGCGGCGTTTGTCTCTTCCCCCCC
CAGTTGCTGCTTCTTACTACAATATTTTCTAATCCTTGTACCATGTTCCA
TTACCTCTTAGGATTATTTTTCTTTACATTACCTCATATATGATCCATCG
AGTATATATCCCTGCCGAATACTCTCTGATGGATCTCCTTGGCCATTTCC
TCCGGTTTATTTTGCCTGTCCTTTGTTCCTCTTTATACCTTCCCCTTAAT
TTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no474_f08.g1 MSMg01no474_f08.g1 CHROMAT_FILE:
MSMg01no474_f08.g1 PHD_FILE: MSMg01no474_f08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:52:45 2005
         (240 letters)



>mm_chr4_82606002_82606639
          Length = 638

 Score =  453 bits (234), Expect = e-132
 Identities = 238/240 (99%), Gaps = 2/240 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttgttagcccaggactggcaacttccctgataagagtggggaagatgaatcacagcattc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttgttagcccaggactggcaacttccctgataagagtggggaagatgaatcacagcattc 260

                                                                       
Query: 61  tagaggactaatgagtcaggtgattgaggcttttcaagatcattgctatcttctataaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tagaggactaatgagtcaggtgattgaggcttttcaagatcattgctatcttctataaga 320

                                                                       
Query: 121 tgaaagatagcctcaaatcactacttgataaggttggtaggagcagtgtcaggattacat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgaaagatagcctcaaatcactacttgataaggttggtaggagcagtgtcaggattacat 380

                                                                       
Query: 181 gacagcgaagacaagtaccacagtctgggttgccttaaaggggatgctgggataaaagac 240
           |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gacagcgaaga--agtaccacagtctgggttgccttaaaggggatgctgggataaaagac 438


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 240
Length of database: 638
Length adjustment: 9
Effective length of query: 231
Effective length of database: 629
Effective search space:   145299
Effective search space used:   145299
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)