Query= MSMg01no474_l09.b1 MSMg01no474_l09.b1 CHROMAT_FILE:
MSMg01no474_l09.b1 PHD_FILE: MSMg01no474_l09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:53:15 2005
(555 letters)
>mm_chr4_37692433_37693387
Length = 955
Score = 1035 bits (535), Expect = 0.0
Identities = 550/555 (99%)
Strand = Plus / Plus
Query: 1 agaccccaaatttaattcagaatataaaacacatgcttatactgcacacatataggtaca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agaccccaaatttaattcagaatataaaacacatgcttatactgcacacatataggtaca 260
Query: 61 tgcttacacacaaacacatacacaagggacgatgtaattctctacacataatatgcaact 120
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 261 tgcttacacacaaacacatacacaagggactatgtaattctctacacataatatgcaact 320
Query: 121 tttaaatgcaaattatatatgtaactttctctgacaataaaagagaactgtaaatagtta 180
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttaaatgtaaattatatatgtaactttctctgacaataaaagagaactgtaaatagtta 380
Query: 181 aagtattggtacaacatttacaattaagattaaaatataacactcaggaatagactgaat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aagtattggtacaacatttacaattaagattaaaatataacactcaggaatagactgaat 440
Query: 241 gagttctatcctgctgtttgaagttgtctatcctattacaaagtacttatttttatttca 300
|||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gagtactaacctgctgtttgaagttgtctatcctattacaaagtacttatttttatttca 500
Query: 301 atcatgtatttgtttataggaaatatcagtggtcaaaagtgctttagaagtacattaacc 360
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 501 atcatgtatttgtttataggaaacatcagtggtcaaaagtgctttagaagtacattaacc 560
Query: 361 gctacaacattttgttgttgttgttccatctgagacttttctaaccctcaggctatgtgc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gctacaacattttgttgttgttgttccatctgagacttttctaaccctcaggctatgtgc 620
Query: 421 ctgttgcaaatattgtttatgaggtcattctggtaggttcacgtgactttagcagaacag 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctgttgcaaatattgtttatgaggtcattctggtaggttcacgtgactttagcagaacag 680
Query: 481 tatcacgaacagcccacatgcctcagctgtagtcataccctgtccacagttcattctagt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tatcacgaacagcccacatgcctcagctgtagtcataccctgtccacagttcattctagt 740
Query: 541 cattttcctgaacag 555
|||||||||||||||
Sbjct: 741 cattttcctgaacag 755
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 555
Length of database: 955
Length adjustment: 10
Effective length of query: 545
Effective length of database: 945
Effective search space: 515025
Effective search space used: 515025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no474_l09.g1 MSMg01no474_l09.g1 CHROMAT_FILE:
MSMg01no474_l09.g1 PHD_FILE: MSMg01no474_l09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:53:15 2005
(546 letters)
>mm_chr4_37855380_37856326
Length = 947
Score = 1004 bits (519), Expect = 0.0
Identities = 540/549 (98%), Gaps = 5/549 (0%)
Strand = Plus / Minus
Query: 1 aaaggacatcctcagctaacagactatcagttctcacatttgaccctgcttgagacagaa 60
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 747 aaaggacatcctcagctaacagactatcagtcctcacatttgaccctgcttgagacagaa 688
Query: 61 tctttttgttgttttctctttcaggcacctttgtacttgctgctcctgattctggattct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 tctttttgttgttttctctttcaggcacctttgtacttgctgctcctgattctggattct 628
Query: 121 cctgtatcaactctcatcttctcataggagcactgggattagagttgcattatattgaat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 cctgtatcaactctcatcttctcataggagcactgggattagagttgcattatattgaat 568
Query: 181 ctcatccatgctgtatgtgtgaacttgggtttcaaactaaggttttcacacttatac--- 237
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 567 ctcatccatgctgtatgtgtgaacttgggtttcaaactaaggtcttcacacttatacaaa 508
Query: 238 attatttttcatccattaatctatcctttcattgattgtctgctaagtcagacaaacaaa 297
| || ||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 507 a--atatttcatccattaatctatcctatcattgattgtctgctaagtcagacaaacaaa 450
Query: 298 atctgcttttgtgagtggcaaaccatcttaaatgcttctttaagcttttgtggaaaatta 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 atctgcttttgtgagtggcaaaccatcttaaatgcttctttaagcttttgtggaaaatta 390
Query: 358 tttcaataaagtagaagtcatacaacaacaatgaggtcatttatcactataatttatttt 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 tttcaataaagtagaagtcatacaacaacaatgaggtcatttatcactataatttatttt 330
Query: 418 tacataattgaaaaacactgatatataaagaaaaataattttcaaggtaattcttatgca 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 tacataattgaaaaacactgatatataaagaaaaataattttcaaggtaattcttatgca 270
Query: 478 tcttattatcctaatattggcttaaattatgatgtcattttacttgaagatgacattaaa 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 tcttattatcctaatattggcttaaattatgatgtcattttacttgaagatgacattaaa 210
Query: 538 tccattagg 546
|||||||||
Sbjct: 209 tccattagg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 546
Length of database: 947
Length adjustment: 10
Effective length of query: 536
Effective length of database: 937
Effective search space: 502232
Effective search space used: 502232
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
