BAC Information

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BAC

Clone NameMSMg01-474P10
Chromosome4 (Build37)
Map Location 26,681,660 - 26,681,962
singlet/doubletsinglet
Overlap genenone
Upstream geneFut9, LOC100040780, Hn1-ps1, Manea, Bhmt-ps1, LOC665079, Gng2-ps1
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-474P10.T7 (MSMg01no474_p10.b1)MSMg01-474P10.TJ (MSMg01no474_p10.g1)
ACCAG556901AG556902
length722739
length of high quality
(start - end)
303 (325 - 627)617 (78 - 694)
definitionCHROMAT_FILE: MSMg01no474_p10.b1 PHD_FILE: MSMg01no474_p10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:53:35 2005CHROMAT_FILE: MSMg01no474_p10.g1 PHD_FILE: MSMg01no474_p10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:53:35 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTCAAGTTACGAATACCAAATGGCTGAGAAGCACCTGAAAAAAAA
TGTTCAACATCCTTAATCATCACAGAAATGCAAATCAAAACAACCCTCAC
ACCAGTCAGAATAGCTAAAATCAAAAATTCAGGTGACAGCAGATGCTGGC
GAGGATGTGGAGAAAGAGGGACACTGCTCCATTGTTGGTGGGATTGCAAG
TTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTCAGAAAAGTGGA
CATAGTAAAAATTCTTTTGTAGATATAAAAATAATAACTTCTTAATTCAA
CTGATTTTGAGGTTCTTTTCAATGTTGTCCCTTTATGATTCTTTGGGATT
TATGCATGCATTTTGAGCTTTAGCATGATAGAAAAATAGAAGCTGAAAAT
CTAACTCAATGGTAGAAACTGGGCTAATACCCTCAGGGTTCCACTTTTGA
ACCCTAGAACCACACAGAAAAAATTAAATTCTAGTTTTCTTGTGACTTTA
GCTTAGAATAACTTCAAGTTAATACCTTTGAATGTTGCAAAGCCAAACTT
AACTTTTCTCCTAGAAATTTCACCTAGNAATATTTTTCTTACATACAAGA
TATTTCTTTTTTTTTTAATTTTTTTATTAGGTATTTTCCTCGTTTACATT
TCCAATGCTATCCCAAAAGTCC
CCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAAATGAGTAAAACAGTTCAAGAC
ATAAAAGTGGAGATAAAATCAATAAAGAAAACTTAAATCAAGTGGAATTT
GGGACATAAAAATTTAGGAACTAGAATAGTAACCTCAAGGGCAGGCTTCT
CCAACAAAATACAAGATCAGGAAGTAATCATCTCAGACACTGAAGACATG
ATAGAAGAGATGTTAAATCTAAACAATTCCTTAAATAAAACATGTAGACA
ATGTGGGATAGTAACAAATGTTTTTCTCTACAGAAGAACCAGAAAGGAAA
ACTGAAATGTGAATAGGTTAACCACACTTCAAAACAGTATAACTAATAAA
CAAAGAAAAACAACTCAAAAGAACACAAATACCACCACCTGTACTACTTA
CCACCACAACAATGAAATAACACAAATTAACAAACATCATTCATCAGTAT
GTCTCAATATCAATTCAATTACCCAACAAAAAGTCACAGACTAAGAGATG
GGTGCAAAATAGGATCCATCCTTTTGCTGTATCCAAGAATCACAACTTAA
CTTCAAAGATAGATATCATTTCAAGGTAAAGAGTTAANAAACCTTATTCC
AATACAATGGATATAAGGAAGAAACTGGGATAGCTCTTTTAATATTTGAC
AAAATATACTTCAGACCAAAATTAATTAGAAGAAATAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no474_p10.b1 MSMg01no474_p10.b1 CHROMAT_FILE:
MSMg01no474_p10.b1 PHD_FILE: MSMg01no474_p10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:53:35 2005
         (303 letters)



>mm_chr4_26681460_26682162
          Length = 703

 Score =  578 bits (299), Expect = e-169
 Identities = 302/303 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ataaaaataataacttcttaattcaactgattttgaggttcttttcaatgttgtcccttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 ataaaaataataacttcttaattcaactgattttgaggttcttttcaatgttgtcccttt 444

                                                                       
Query: 61  atgattctttgggatttatgcatgcattttgagctttagcatgatagaaaaatagaagct 120
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 atgattctttgagatttatgcatgcattttgagctttagcatgatagaaaaatagaagct 384

                                                                       
Query: 121 gaaaatctaactcaatggtagaaactgggctaataccctcagggttccacttttgaaccc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 gaaaatctaactcaatggtagaaactgggctaataccctcagggttccacttttgaaccc 324

                                                                       
Query: 181 tagaaccacacagaaaaaattaaattctagttttcttgtgactttagcttagaataactt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 tagaaccacacagaaaaaattaaattctagttttcttgtgactttagcttagaataactt 264

                                                                       
Query: 241 caagttaatacctttgaatgttgcaaagccaaacttaacttttctcctagaaatttcacc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 caagttaatacctttgaatgttgcaaagccaaacttaacttttctcctagaaatttcacc 204

              
Query: 301 tag 303
           |||
Sbjct: 203 tag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 303
Length of database: 703
Length adjustment: 9
Effective length of query: 294
Effective length of database: 694
Effective search space:   204036
Effective search space used:   204036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)