BAC Information

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BAC

Clone NameMSMg01-475E05
Chromosome4 (Build37)
Map Location 135,333,124 - 135,514,362
singlet/doubletdoublet
Overlap geneMyom3, Fusip1, Pnrc2, Cnr2, Fuca1, Hmgcl
Upstream geneTmem57, Rhd, Tmem50a, D4Wsu53e, Syf2, Runx3, Clic4, LOC676072, Srrm1, A330049M08Rik, LOC665287, Dscr1l2, Npal3, 4930555I21Rik, Grhl3, 1700029M20Rik, Il28ra, Il22ra1, LOC665334
Downstream geneGale, Lypla2, 1110049F12Rik, LOC669445, Tceb3, Rpl11, Id3, E2f2, Ddefl1, Tcea3, Zfp46, Hnrpr, Htr1d, LOC100042540, Luzp1, Aof2, LOC667080, LOC433770, 4930549C01Rik, BC029684, Ephb2, C1qb, C1qc, C1qa, Epha8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-475E05.T7 (MSMg01no475_e05.b1)MSMg01-475E05.TJ (MSMg01no475_e05.g1)
ACCAG557130AG557131
length835762
length of high quality
(start - end)
170 (78 - 247)425 (83 - 507)
definitionCHROMAT_FILE: MSMg01no475_e05.b1 PHD_FILE: MSMg01no475_e05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:53:59 2005CHROMAT_FILE: MSMg01no475_e05.g1 PHD_FILE: MSMg01no475_e05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:53:59 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(135,514,193 - 135,514,362)(135,333,124 - 135,333,548)
sequence
CCTATCXXXXXXXXXXXXXXXXXXXXXXATACTATTTTCTGACCATCCGC
GGAATTCCCAAGAGTTACAGCAACACAGACTGGAGCTGAGTGTCTGGAGG
GGGCGCCCCTTGGGGTGGGATTGGCCGAACAGTATTCAGGTCAGTAATGC
CAGCGTGAACACACAGGCTCCAGGGGCTGATGCCTCACCAGCTTTGATAT
TTACTGAGATGAACAGGATGTGCCATGCACTGGACACAGAGCAGTGGTAG
GACCCTATTCTGCAGGAGCTCATTCAAGCCACGAAGATGGTATATATGAC
CTCAGTCACGCTAGGAGGGCATTTAATTTTTTACCCAGCTGATCTGTGAA
GTGAGCAGCGTTTTTATTCTCACCCCCCTCCTCCCTCTTTCCCCCCTCCT
TCATCCCTTCTTCTTTCCTCCCCTCCCCTTCTTCTTTCCGCCTATTCCAC
TTTCCCCCTCTCTCTCTCTCCCCCTCACCTACCACTCCCCATTTTTTCCA
CCTTCCCTTTCTTCTTCTCCTCCTTACTCTTTCTCTCTCTTCTACCTCTT
CTCCTCTCTCTCCTTTTCCCCTCCTTTTCTTCATTCTTCTCCCTATTCTT
CTTCCCCCCTATTTTACACGCGCTCCCCCTCCTTTCCCTCTCCCCCCCCC
TTTCTTCTTTTCCCTTTCCTCCCCCCCCCTCGCTCATACGCTTTTATCCC
TCTTCCCCTTCTTTCCCTTTTCCTCTCTCCCCTCCCTTTCCCCAATCTAT
TATTCCTTCTCTTTTAGTCCCCCTTTTTCTGCCCCCACTCATATCCTCCC
CCCTTTCTTCACCCCCTATATCCTCCACATCTCAT
NNNNNCCCGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGGGACAAACCTTTAAGT
ACTTTGAAGCCTGGGCACCTGTACATTTGGTGGCTATGTCATACACCAGA
GAGGGACACGCTAAGAGTGGGGAAGGGTGGGCAGGAAGACAGAACTCACT
ACTGCCTTCACATGCTATAAACACTGAGGCTGGAGCTAGCAAGAAAACCA
GGCCTAAGAGTAGAGGGCCCAGTGATCTCTCTGTGTGTTCCTGGGTCTCC
ACTCAGTTTCCGAGCTCTCTGAGCTTGCATGCCCTGTAGAAGTTAGGATC
TGCGTCCTCCTCCCAGCCCCGTGCTCCTAGAAAGAAGACTCAGATTCAAA
ACGTAGTCACAAATGCCTTGGCCATATAGTTAGGCTCTTCTCCAACTAGA
ACCATAACCCATTTATTTACTCTAGCCTACATTCCGCCACGAGGCTGGAT
ACCTGTGCTCAGGTACCATTCCTCTGGCTCCTTACATATTCCCGGTGGGT
CTTTCCTGGGTTTATCCCAAAATCCTTTCTGGCTAGCCATAGGTTAGGGT
TTTTTTATTTGGCCAGGGGGCCCGCCCCCTTCCTTCCCCGTAATTTTCTC
CTCCCTCCCGCTCTCCCTTTTTGTGTGTGATCTCTTCTATCTCCCGCGCC
CCCTTCTATCTCGTCGCTATACCCTTTTCTGCATCCGTTCCTCTCCTCCG
TAGCTCCCAAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no475_e05.b1 MSMg01no475_e05.b1 CHROMAT_FILE:
MSMg01no475_e05.b1 PHD_FILE: MSMg01no475_e05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:53:59 2005
         (170 letters)



>mm_chr4_135513993_135514562
          Length = 570

 Score =  275 bits (142), Expect = 1e-78
 Identities = 163/170 (95%)
 Strand = Plus / Minus

                                                                       
Query: 1   gactggagctgagtgtctggagggggcgccccttggggtgggattggccgaacagtattc 60
           ||||||||||||||||||||||||||||||||||||||||||| |||  |||||||||||
Sbjct: 370 gactggagctgagtgtctggagggggcgccccttggggtgggagtgggggaacagtattc 311

                                                                       
Query: 61  aggtcagtaatgccagcgtgaacacacaggctccaggggctgatgcctcaccagctttga 120
           |||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||
Sbjct: 310 aggtcagtaatgccagcgtgaacacacaggctccagggcctgatgtctcaccagctttga 251

                                                             
Query: 121 tatttactgagatgaacaggatgtgccatgcactggacacagagcagtgg 170
           |||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct: 250 tatttactgagatgaagaggatgtgccaggcactggacacagagcagtgg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 170
Length of database: 570
Length adjustment: 8
Effective length of query: 162
Effective length of database: 562
Effective search space:    91044
Effective search space used:    91044
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no475_e05.g1 MSMg01no475_e05.g1 CHROMAT_FILE:
MSMg01no475_e05.g1 PHD_FILE: MSMg01no475_e05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:53:59 2005
         (425 letters)



>mm_chr4_135332924_135333748
          Length = 825

 Score =  783 bits (405), Expect = 0.0
 Identities = 420/425 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgggacaaacctttaagtactttgaagcctgggcacctgtacatttggtggctatgtcat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgggacaaacctttaagtactttgaagcctgggcacctgtacatttggtggctatgtcat 260

                                                                       
Query: 61  acaccagagagggacacgctaagagtggggaagggtgggcaggaagacagaactcactac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acaccagagagggacacgctaagagtggggaagggtgggcaggaagacagaactcactac 320

                                                                       
Query: 121 tgccttcacatgctataaacactgaggctggagctagcaagaaaaccaggcctaagagta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgccttcacatgctataaacactgaggctggagctagcaagaaaaccaggcctaagagta 380

                                                                       
Query: 181 gagggcccagtgatctctctgtgtgttcctgggtctccactcagtttccgagctctctga 240
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gagggcccagtgatctctgtgtgtgttcctgggtctccactcagtttccgagctctctga 440

                                                                       
Query: 241 gcttgcatgccctgtagaagttaggatctgcgtcctcctcccagccccgtgctcctagaa 300
            |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 441 acttgcatgccctgtagaagttaggatctgcatcctcctcccagccccgtgctcctagaa 500

                                                                       
Query: 301 agaagactcagattcaaaacgtagtcacaaatgccttggccatatagttaggctcttctc 360
           |||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agaagactcagattcaaaatatagtcacaaatgccttggccatatagttaggctcttctc 560

                                                                       
Query: 361 caactagaaccataacccatttatttactctagcctacattccgccacgaggctggatac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 caactagaaccataacccatttatttactctagcctacattccgccacgaggctggatac 620

                
Query: 421 ctgtg 425
           |||||
Sbjct: 621 ctgtg 625


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 425
Length of database: 825
Length adjustment: 9
Effective length of query: 416
Effective length of database: 816
Effective search space:   339456
Effective search space used:   339456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)