BAC Information

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BAC

Clone NameMSMg01-475E10
Chromosome4 (Build37)
Map Location 122,781,635 - 122,967,506
singlet/doubletdoublet
Overlap geneBmp8b, Oxct2b, Ppie, Hpcal4, Nt5c1a, Heyl, LOC194197, LOC622334, Pabpc4
Upstream geneLOC633269, LOC633279, 9530002B09Rik, Ppt1, Cap1, Mfsd2, Mycl1, Trit1
Downstream geneBmp8a, Oxct2a, Macf1, D830031N03Rik, LOC100039110, Ndufs5, 6330407G11Rik, Rhbdl2, LOC667064, Mycbp, Rragc
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-475E10.T7 (MSMg01no475_e10.b1)MSMg01-475E10.TJ (MSMg01no475_e10.g1)
ACCAG557140AG557141
length794761
length of high quality
(start - end)
248 (79 - 326)348 (70 - 417)
definitionCHROMAT_FILE: MSMg01no475_e10.b1 PHD_FILE: MSMg01no475_e10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:54:00 2005CHROMAT_FILE: MSMg01no475_e10.g1 PHD_FILE: MSMg01no475_e10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:54:00 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(122,781,635 - 122,781,881)(122,967,159 - 122,967,506)
sequence
CTCGCCCTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCACACCAC
CGCGGAATTCATAGTTGTTTCAAACCCTTATGTAACGCACTGTCTGTTAA
GCCCTTTAACGCATATCCTTCTTGGTAGCCTCTCCAGCAGCCAACCACCC
AGTGCCTGAAGCTTTCTAGTTCCATTGTTGTGCGGCCTGAGGGAAGGTGT
TTAAGCTCTGTGTGCCTGGGTTTCCCTCCCGGATACTCCAGAGTCAATCT
GAGGTTGGATCAGCCAGCAGTGTGGTCTGTCTGGGCCTGGCAGAGAATAG
CTTGGCGCACAGAACCAGCGCTCATTGTTTATTGAGGCGTCTTCCCCGGA
CAGCGGGGAAGGCACCTAGCAGACAGGAGCGGCGGAGTCCGGGCCCTGGC
AGCTTCTGGCGACAGAATGTGCCCCACCCTCGAGGCACGGTTGGCATCCG
CCCCGCCCCGACGGTCAGTCCAATGGGCGCTTCCGGAGACGTGTGGGGCC
CATCTCATTTTCCGTACTTGTGCGCTCCCCCCACTTCAAACAATTCCCTT
CCCAGGGGCACGCGCTTTCCTTACACAATTCGATGCCTTCCTTTCGTATC
CCGTCTTCGCGCCCCTCTCTTACTTCTTCGTCTTTTCCCCCCCTCTCCCC
TCGTTTTCCTCTTCCGCTCTTTTCTTTTTTTTTTCTCCCCCCTCTTTCCT
CCCCTCCCATTTATTACCCCTCCACATTCTTTTTAACTCATTTGCTCTCA
CCCATGTTTCCCCTCTATGTGTTCTCCTCATCTTTCTTTTTATT
TTCTCCCATGATATGGTAGCCTGGGGGCGCCTGTTCTCGACTTTAGGTGA
CCTATAGATTGCCCGCGGAATTCCTTGGCCTTGGCTCCAAGCTCCGCTTC
CCGCTCTTTGCGAGACTTGAATCTACCCACGAACCTACGAGAAACCACGG
ATAGCGGCGGTTACTCAGGAGGAACAGAACACGATTTCCGGGGGCCCAAA
GGAATGCAGATTAAAGGCTGACAGGAGAGGTTAAAACACACGAGGACCCC
GTCCACCATGAGAACAAGCTCAGATGCCCCAAGTCCCCAGCAGAAAAAAA
GGAAGAGGCAGGGGCTGTCCTGCAAGGACCAGTCCCAGGGCTCCTGGTTC
CGACCAGGGCCACTCCTACCACATCACACTGCCTTCGTGATGAAACCTGA
CGACCATGTTTTTAAAACGGTTCATTTCTGTGCATCTATGTACACGCATA
GACCATCTCTGGAAGGATACAAGCCAAACTGTCAACAGTGCCTAGTCCAG
CACCGAGGTTCCTGCCATCGTTCGACCTCTGTCCCCCCGCCCTTTCACTT
GTGAACCCTCCTCGGATTTTTTCTCCCCCCCTTCCTATCCCTCTACCCCC
CTCTCTCGTTTTGTCTTTTCCCTTCCCCCCCCCCTTTATTCCTATCCCTC
GTTTCTTTTTCCACCCCCCCACCCCGTTTATCCGCCCTTTTTCCTATTTT
TGCCTTCCCCCCTTCCCCTTTTTTTTTTCCCCTTCCCTTATTTTCTTCCC
CCTTTCGTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no475_e10.b1 MSMg01no475_e10.b1 CHROMAT_FILE:
MSMg01no475_e10.b1 PHD_FILE: MSMg01no475_e10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:54:00 2005
         (248 letters)



>mm_chr4_122781435_122782082
          Length = 648

 Score =  455 bits (235), Expect = e-132
 Identities = 244/247 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tatgtaacgcactgtctgttaagccctttaacgcatatccttcttggtagcctctccagc 60
           |||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 201 tatgtagcgcactgtctgttaagccctttaacgcatatccctcttggtagcctctccagc 260

                                                                       
Query: 61  agccaaccacccagtgcctgaagctttctagttccattgttgtgcggcctgagggaaggt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agccaaccacccagtgcctgaagctttctagttccattgttgtgcggcctgagggaaggt 320

                                                                       
Query: 121 gtttaagctctgtgtgcctgggtttccctcccggatactccagagtcaatctgaggttgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtttaagctctgtgtgcctgggtttccctcccggatactccagagtcaatctgaggttgg 380

                                                                       
Query: 181 atcagccagcagtgtggtctgtctgggcctggcagagaatagcttggcgcacagaaccag 240
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 attagccagcagtgtggtctgtctgggcctggcagagaatagcttggcgcacagaaccag 440

                  
Query: 241 cgctcat 247
           |||||||
Sbjct: 441 cgctcat 447


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 248
Length of database: 648
Length adjustment: 9
Effective length of query: 239
Effective length of database: 639
Effective search space:   152721
Effective search space used:   152721
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no475_e10.g1 MSMg01no475_e10.g1 CHROMAT_FILE:
MSMg01no475_e10.g1 PHD_FILE: MSMg01no475_e10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:54:00 2005
         (348 letters)



>mm_chr4_122966959_122967706
          Length = 748

 Score =  658 bits (340), Expect = 0.0
 Identities = 346/348 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   attccttggccttggctccaagctccgcttcccgctctttgcgagacttgaatctaccca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 attccttggccttggctccaagctccgcttcccgctctttgcgagacttgaatctaccca 489

                                                                       
Query: 61  cgaacctacgagaaaccacggatagcggcggttactcaggaggaacagaacacgatttcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 cgaacctacgagaaaccacggatagcggcggttactcaggaggaacagaacacgatttcc 429

                                                                       
Query: 121 gggggcccaaaggaatgcagattaaaggctgacaggagaggttaaaacacacgaggaccc 180
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 428 gggggcccaaaggaatgcagattaaaggctgacaggagaggttaaaacgcacgaggaccc 369

                                                                       
Query: 181 cgtccaccatgagaacaagctcagatgccccaagtccccagcagaaaaaaaggaagaggc 240
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 cgtccaccacgagaacaagctcagatgccccaagtccccagcagaaaaaaaggaagaggc 309

                                                                       
Query: 241 aggggctgtcctgcaaggaccagtcccagggctcctggttccgaccagggccactcctac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 aggggctgtcctgcaaggaccagtcccagggctcctggttccgaccagggccactcctac 249

                                                           
Query: 301 cacatcacactgccttcgtgatgaaacctgacgaccatgtttttaaaa 348
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 cacatcacactgccttcgtgatgaaacctgacgaccatgtttttaaaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 348
Length of database: 748
Length adjustment: 9
Effective length of query: 339
Effective length of database: 739
Effective search space:   250521
Effective search space used:   250521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)