Query= MSMg01no475_l05.b1 MSMg01no475_l05.b1 CHROMAT_FILE:
MSMg01no475_l05.b1 PHD_FILE: MSMg01no475_l05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:54:34 2005
(406 letters)
>mm_chr4_31814429_31815234
Length = 806
Score = 762 bits (394), Expect = 0.0
Identities = 403/406 (99%)
Strand = Plus / Plus
Query: 1 aacaatgtataaagcaaccccacacagggagctcctagggagcctgagacccttttgatt 60
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 201 aacaatgtataaagcaaccccacacagggagctcctagggagcccgagacccttttgatt 260
Query: 61 atatggtgtttagaataaaataaaacaaatcccatgttcttttattctgacctgaaaaca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atatggtgtttagaataaaataaaacaaatcccatgttcttttattctgacctgaaaaca 320
Query: 121 gcttctaaatgatcaccttgggtgttctttccctctacttattgctatgttcttccatgt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcttctaaatgatcaccttgggtgttctttccctctacttattgctatgttcttccatgt 380
Query: 181 gaattactgctcagcatcacctcagaaaccagctgaatattggccgattgtacgaagaca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaattactgctcagcatcacctcagaaaccagctgaatattggccgattgtacgaagaca 440
Query: 241 gtctcacattgatattatagtacccctccccggacttgctctattcgtagacccagccat 300
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtctcacattgagattatagtacccctccccggacttgctctattcgtagacccagccat 500
Query: 301 tataagaatcctaaagacagacacagaactccacattcaaatggtgcatttgaatcacat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tataagaatcctaaagacagacacagaactccacattcaaatggtgcatttgaatcacat 560
Query: 361 ggtgaagtgtattgtataaatgccaatgaagagaaatatggcattg 406
||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 561 ggtgaagtgtattgtataaatgcaaatgaagagaaatatggcattg 606
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 406
Length of database: 806
Length adjustment: 9
Effective length of query: 397
Effective length of database: 797
Effective search space: 316409
Effective search space used: 316409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no475_l05.g1 MSMg01no475_l05.g1 CHROMAT_FILE:
MSMg01no475_l05.g1 PHD_FILE: MSMg01no475_l05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:54:34 2005
(331 letters)
>mm_chr4_31969950_31970683
Length = 734
Score = 630 bits (326), Expect = 0.0
Identities = 331/334 (99%), Gaps = 3/334 (0%)
Strand = Plus / Minus
Query: 1 attatatagaccaggccggccttgaactcacagatatctgccactctcctgcctacctgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 attatatagaccaggccggccttgaactcacagatatctgccactctcctgcctacctgg 563
Query: 61 tgctgggattgtgacactacacccagctaaatagaaacactagacaccttttctccagac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 tgctgggattgtgacactacacccagctaaatagaaacactagacaccttttctccagac 503
Query: 121 agcagacacctttcagcatcctggattttcac---atgttgagctgagcttagtctgcct 177
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 502 agcagacacctttcagcatcctggattttcacataatgttgagctgagcttagtctgcct 443
Query: 178 tggttattccttttaggacactgtagttagtctgtaggcactacagaaggagacaaaatt 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 tggttattccttttaggacactgtagttagtctgtaggcactacagaaggagacaaaatt 383
Query: 238 atgcagatcagataatgacagatataggctgatcaagttggctcaggctcttacaatgga 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 atgcagatcagataatgacagatataggctgatcaagttggctcaggctcttacaatgga 323
Query: 298 acaccaaatgcagggtgagtaatagcaggcacac 331
||||||||||||||||||||||||||||||||||
Sbjct: 322 acaccaaatgcagggtgagtaatagcaggcacac 289
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 331
Length of database: 734
Length adjustment: 9
Effective length of query: 322
Effective length of database: 725
Effective search space: 233450
Effective search space used: 233450
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
