Query= MSMg01no475_m22.b1 MSMg01no475_m22.b1 CHROMAT_FILE:
MSMg01no475_m22.b1 PHD_FILE: MSMg01no475_m22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:54:42 2005
(274 letters)
>mm_chr4_142077604_142078276
Length = 673
Score = 495 bits (256), Expect = e-144
Identities = 270/276 (97%), Gaps = 5/276 (1%)
Strand = Plus / Plus
Query: 1 attcactaacc--gtttacacaaaaagatctgggtatgcctacttctagggtcccacctc 58
||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attcactaaccagga--acacaaaaagatctgggtatgcctacttctagggtcccacctc 258
Query: 59 ttctctctttgtctatttctctttaacacatggatacactaagaccatctgtgccccttc 118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 ttctctctttgtctatttctctttaacacatggatacactaagaccatctgtgccccttc 318
Query: 119 taacccaatgcccttcacctctgcccaaggtcctgagccactgcagaggcaagggaggga 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 taacccaatgcccttcacctctgcccaaggtcctgagccactgcagaggcaagggaggga 378
Query: 179 gggggctgttccaggtgaacaggatatgaattcttctacccccggggacccatttggtaa 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 gggggctgttccaggtgaacaggatatgaattcttctacccccggggacccatttggtaa 438
Query: 239 attggttcttttaacttaaaaaaaaaaaagatactt 274
|||||||||||||||||||||||||||| |||||||
Sbjct: 439 attggttcttttaacttaaaaaaaaaaa-gatactt 473
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 274
Length of database: 673
Length adjustment: 9
Effective length of query: 265
Effective length of database: 664
Effective search space: 175960
Effective search space used: 175960
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no475_m22.g1 MSMg01no475_m22.g1 CHROMAT_FILE:
MSMg01no475_m22.g1 PHD_FILE: MSMg01no475_m22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:54:42 2005
(352 letters)
>mm_chr4_142245013_142245764
Length = 752
Score = 611 bits (316), Expect = e-179
Identities = 343/352 (97%)
Strand = Plus / Minus
Query: 1 tcagttcctcctgcaccatgcctgcttggatgctgccatgttcccaccttgatgataatg 60
|||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||
Sbjct: 714 tcagttcctcctgcactgtgcctgcttggatgctgccatgctcccaccttgatgataatg 655
Query: 61 gactgaacctctgaacctgtaagccaaaaacaattaaatgtccttacaaacgttgccttg 120
|||||||||||||||||||||||||| |||||||||||| |||||||||| |||||||||
Sbjct: 654 gactgaacctctgaacctgtaagccagaaacaattaaatatccttacaaaagttgccttg 595
Query: 121 gtcattgtatctgctcacagcaataaacccctaactaagacaccacccaaaagtcagatc 180
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 594 gtcattgtatctgctcacagcaataaaaccctaactaagacaccacccaaaagtcagatc 535
Query: 181 tctgtgaaacggatatggtaaaacctcaccaagagccaaatgctttgtgcttttctgctg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 tctgtgaaacggatatggtaaaacctcaccaagagccaaatgctttgtgcttttctgctg 475
Query: 241 cattaagacaactaagaaacactgtgtgtgtggtagatgtggaatttgctggttgtgtgc 300
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 cattaagacagctaagaaacactgtgtgtgtggtagatgtggaatttgctggttgtgtgc 415
Query: 301 ataagcccacctcctgaatacagagaggacaaaatgctcagaactttgcata 352
|||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 ataaacccacctcctgaatacagagaggacaaaatgctcagaactttgcata 363
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 352
Length of database: 752
Length adjustment: 9
Effective length of query: 343
Effective length of database: 743
Effective search space: 254849
Effective search space used: 254849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
