BAC Information

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BAC

Clone NameMSMg01-475P22
Chromosome4 (Build37)
Map Location 11,603,345 - 11,789,360
singlet/doubletdoublet
Overlap geneLOC100039862, Gem, Cdh17
Upstream gene1700123O12Rik, LOC383991, LOC100039656, LOC545589, 2610301B20Rik, LOC383992, LOC100039746, Plekhf2, 2310030N02Rik, LOC546828, LOC666897, Trp53inp1, Ccne2, Ints8, Dpy19l4, Rbm35a, LOC634834, 1110037F02Rik, LOC100039847, E130016E03Rik
Downstream genePpm2c, Tmem67, C430048L16Rik, LOC230010, LOC623671, LOC100039958, Rbm12b, 6720467C03Rik, LOC545592
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-475P22.T7 (MSMg01no475_p22.b1)MSMg01-475P22.TJ (MSMg01no475_p22.g1)
ACCAG557690AG557691
length727774
length of high quality
(start - end)		150 (40 - 189)417 (79 - 495)
definitionCHROMAT_FILE: MSMg01no475_p22.b1 PHD_FILE: MSMg01no475_p22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:54:57 2005CHROMAT_FILE: MSMg01no475_p22.g1 PHD_FILE: MSMg01no475_p22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:54:57 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(11,603,345 - 11,603,494)(11,788,981 - 11,789,360)
sequence
NATTTTCTGCCCGGGCCTGAAGGAAGTCAGAGTAGGCAGAAACTCAGGCA
CTGGCCTGGACTTGTTCTCACAAACATAGACTTAGCAGGGTCGTTGGGAA
ACATGAAAACATAAAACCCCCGAGAGATGATTCCACAAACTAGAAAATCT
TGTTCTCATCTGTTCCTGCAGCCATGGGCAGGAAGGGCAGTAAAGCGGGA
CCCAGACAGCTGATGCAGAGGTCTCCACCTGTTAACCCCAGACATGCTTT
CAAACATGCTTTTTTCCGTAATCCAGCCTAAGTCAACCTACAGGTACTTC
CTGAGCCCCCCATAGGTGCCAAAACTGCCTTGCTTGTGGTTACCTCAAGC
TGACCAGATAGATGCCCTTCCCCCTGTGAAACTTTACTAGTCTATGCCTC
CACCTCCTTAGCCTCATCTTAATATTCCCATCACTTGGCCCAGTCGTGAC
ACAGACTTGTCTGGATGGCAATTCATTCCCATTCCAAATGTCATCGTTTT
ATCATCTTCCCACCCTTCTATTCTTACACTACACCCCCATTCCCTCCCAC
CTTTTTCTTTATCTCCCTCCCCCTCCCTATTCCTCTTCTCTTCTCCCCCC
CCTCTTCTTCTCCTCTCCTCCTTCTCCGATTCCACCCATCCCCTCGTATC
CCTTTTTCCTCCTCCTCCATCCTCCCTCTTACACCCCCTTTCCCCTTTTT
CCTTTTACTCTCCCCCTTCTTCCCCAT

NNCCCATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXATAAAAATAAAGGTTCATTAGC
TTCTGGCTGTAGAAGGTAGGAGGTTCAAGATTAAAGGCTCCATCCTGTGA
GAATCTTCCTGCTGGTGGGTATTCTCTGTAGAGTCACAAGCTGACAAGGA
CATCATAGACACAAAGCCAAAATAAATTGTAAGGCAGACACACTTGTAAC
CCATGAGGCCATCAATCTCTCTGTGTATGAGTACGTTATCCCATTCACGA
GATAAGAGCCATCAGGACCAGTGACCTCCTAAATAGCCCACTGCAGACCT
GTCTCTAAATACCACACAATTTCAATATGGGTTTTGTTGGGAACATTCAA
ACCAGAGCAGAGGGTCTTCCATGTCTCAGTTTATTGCTTCAGTAGCATGC
AGGAGAGAGAACTACTAGGTCTTAACACCACTGTCTCCCATGAGCATGGN
CCAAGCAAGCATCCTAGCATCCTAGTATTTAAAGGAGGCAGTGTAAAGCA
AGCTTCCCTTGGAGTACCAGGAAAGATAAACCTTTCTTTCGTTCTGCCCC
AGCNTATTATGGTTTCCTTCCCACTCCACACTTACTGTGGGGAAGTTCTC
TCGTTCGCTCTCCCCTTTACTGAACTCTTTTCCCCTGTGCTTCTCTCTTT
TCCCACTCCCCTTCTTTTTTTCGCCCTCTTCCCCTTTTTTTTTCCTTTTC
CCCCCCTTTCCCCCTCTTTCTCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no475_p22.b1 MSMg01no475_p22.b1 CHROMAT_FILE:
MSMg01no475_p22.b1 PHD_FILE: MSMg01no475_p22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:54:57 2005
         (150 letters)



>mm_chr4_11603145_11603694
          Length = 550

 Score =  282 bits (146), Expect = 5e-81
 Identities = 149/150 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaactcaggcactggcctggacttgttctcacaaacatagacttagcagggtcgttggga 60
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 201 aaactcaggcactggcctggacttgttctcacaaacatagacttggcagggtcgttggga 260

                                                                       
Query: 61  aacatgaaaacataaaacccccgagagatgattccacaaactagaaaatcttgttctcat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aacatgaaaacataaaacccccgagagatgattccacaaactagaaaatcttgttctcat 320

                                         
Query: 121 ctgttcctgcagccatgggcaggaagggca 150
           ||||||||||||||||||||||||||||||
Sbjct: 321 ctgttcctgcagccatgggcaggaagggca 350


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 150
Length of database: 550
Length adjustment: 8
Effective length of query: 142
Effective length of database: 542
Effective search space:    76964
Effective search space used:    76964
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no475_p22.g1 MSMg01no475_p22.g1 CHROMAT_FILE:
MSMg01no475_p22.g1 PHD_FILE: MSMg01no475_p22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:54:57 2005
         (417 letters)



>mm_chr4_11788981_11789797
          Length = 817

 Score =  688 bits (356), Expect = 0.0
 Identities = 374/380 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ataaaaataaaggttcattagcttctggctgtagaaggtaggaggttcaagattaaaggc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ataaaaataaaggttcattagcttctggctgtagaaggtaggaggttcaagattaaaggc 321

                                                                       
Query: 61  tccatcctgtgagaatcttcctgctggtgggtattctctgtagagtcacaagctgacaag 120
           ||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 320 tccatcctgtgagaaccttcctgctggtgggcattctctgtagagtcacaagctgacaag 261

                                                                       
Query: 121 gacatcatagacacaaagccaaaataaattgtaaggcagacacacttgtaacccatgagg 180
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 260 gacatcatagacacaaagccaaactaaattgtaaggcagacacacttgtaacccatgagg 201

                                                                       
Query: 181 ccatcaatctctctgtgtatgagtacgttatcccattcacgagataagagccatcaggac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 ccatcaatctctctgtgtatgagtacgttatcccattcacgagataagagccatcaggac 141

                                                                       
Query: 241 cagtgacctcctaaatagcccactgcagacctgtctctaaataccacacaatttcaatat 300
           ||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 140 cagtgacctcctaaatatcccactgcagacctgtctcaaaataccacacaatttcaatat 81

                                                                       
Query: 301 gggttttgttgggaacattcaaaccagagcagagggtcttccatgtctcagtttattgct 360
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 80  gggttttgttgggaacattcaaaccagagcagagagtcttccatgtctcagtttattgct 21

                               
Query: 361 tcagtagcatgcaggagaga 380
           ||||||||||||||||||||
Sbjct: 20  tcagtagcatgcaggagaga 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 417
Length of database: 817
Length adjustment: 9
Effective length of query: 408
Effective length of database: 808
Effective search space:   329664
Effective search space used:   329664
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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