BAC Information

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BAC

Clone NameMSMg01-476B04
Chromosome4 (Build37)
Map Location 97,454,450 - 97,454,876
singlet/doubletsinglet
Overlap geneNfia
Upstream geneLOC620883, EG638698
Downstream geneLOC100039459, LOC669426, LOC384106, 0610025J13Rik, Tm2d1, Inadl, L1td1, Ankrd38
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-476B04.T7 (MSMg01no476_b04.b1)MSMg01-476B04.TJ (MSMg01no476_b04.g1)
ACCAG557750AG557751
length843751
length of high quality
(start - end)
---427 (84 - 510)
definitionCHROMAT_FILE: MSMg01no476_b04.b1 PHD_FILE: MSMg01no476_b04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:55:04 2005CHROMAT_FILE: MSMg01no476_b04.g1 PHD_FILE: MSMg01no476_b04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:55:04 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTTTTGGTTTCCTATTTCTATCTTTTCTTTTTTCTTTCTTTCTCCCTTTT
CCCTGTTTTTATTGGTTGGTCTTGGCGCCCTGGTCCCCCTTCTTTCCACT
TTATTCCCCCACCCCCCCTCTTTTTTTTTCTACCAAACACTTATCCTTTC
CTTTAAATTCTTAACCTCATCTTAACTTTCTCAAACCAAACTACACTCTC
TTCCAACCTATCATATAATCTCCACCCTCTCCCCCTTTTACTTATATCTT
ACTCCCACCATTCTATATCCCCCATCCTTTCCATTTCTATCCCTTTTCTT
TTCCTACCCTCCTTCTAAATTATATTCTTTCCATACCCAATACATACAAT
TTTTCTATCATTCATACCCTTTTTCCTTTCTCCTTATCCTCCCCCCCTTC
TCTCTTCCNNNNNNNNCCCCCTTTTCTCCCTNNTCTCATATAAATTTGGC
GGGCCGCCTAAATACGAAACTTCACTAATTTCGGAACAGGGATCCGCCGG
GGAAATTCCTGGGGTTAATACCGGCATCTAATTGTTTAAGAAAGTTAAAC
GGGGTTCTAAATTCGATGCAATTTCCTTTTTGGGCAAATTTTGGAAGGGG
AAATTGGGGGGGGGTTTTGCGATTTACAAAAAGGGTTAACCCTTAAAAAA
AAGGGGTAAAAAAAACCCCGAGAAATTGGCTTCGAAAAAATAAAAGAAAA
AAAAAAAGGGGGGCGTTTGTGGGGGGGAAAAAAAGGGGGGGGGGGGGGAA
AATATTATCTGCCGAGAGGAGAGGACGGGAGTGGGAGGCAAGGCCGCGCG
TTAAGAGTTGCAGGGGAGTAGCAGCCGGAGGAGGGAGGGATAG
AAAACCTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACTTCCTACTGCTTGAG
AGCAGGTGTAAGATGGGGAGTGACTGTGAGTGTGTGCTTTGTGTGCATGT
GTGCACACCCAGGCTGTACCCAGAGTGCTCCTTAAGCAGTAGCAATGATT
TCAGTAGTATTCAAAAGATGCTATTTTAAGTGTGGAATAATTACACATAA
GGTTATAGTGCATAGAAAATAATTTTAAACATTAAAAACAAGTCATATTA
TTTTGTTATATTTTATGATTCTATGTCATATTAATTTTTACAATGCACTG
TCTTTTAGGTGACTTAGCACATTTGCTAGAGGGGGTCTGCATTTCTAACA
TATTCAGCATGTTCTGCTGGCAAGTATATGTGTATATGTGATGTGAATAT
GTGTTTATATCCAAGACTAANGCTGTACATATATAATTAAACTTCTTAAG
AAGCTTAACTCCCTGCAGAAACTTGTGCACATAGTTTCTGTGATTTGTGA
TGATAGAGTATGTTTGAAACTGAATGCATAAGACTTGATAATATCCGGCG
ATTCTCTACAATTAACAATTACTCCTTCTTGCCCTCTATATTTCTTCCTC
CCCCCTTCTCCTATTCTTTCTCTATTTTTCCCACGAATCCATTTTGCTAC
CACCACTCATCCGTATTGCCTTCTTCCCCCCCCTATTTTATACTCTCTCT
C
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no476_b04.g1 MSMg01no476_b04.g1 CHROMAT_FILE:
MSMg01no476_b04.g1 PHD_FILE: MSMg01no476_b04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:55:04 2005
         (427 letters)



>mm_chr4_97454250_97455076
          Length = 827

 Score =  804 bits (416), Expect = 0.0
 Identities = 424/427 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   acttcctactgcttgagagcaggtgtaagatggggagtgactgtgagtgtgtgctttgtg 60
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 201 acttcctactgcttgagagcaggtgtaagatggggagtgcctgtgagtgtgtgctttgtg 260

                                                                       
Query: 61  tgcatgtgtgcacacccaggctgtacccagagtgctccttaagcagtagcaatgatttca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgcatgtgtgcacacccaggctgtacccagagtgctccttaagcagtagcaatgatttca 320

                                                                       
Query: 121 gtagtattcaaaagatgctattttaagtgtggaataattacacataaggttatagtgcat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtagtattcaaaagatgctattttaagtgtggaataattacacataaggttatagtgcat 380

                                                                       
Query: 181 agaaaataattttaaacattaaaaacaagtcatattattttgttatattttatgattcta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agaaaataattttaaacattaaaaacaagtcatattattttgttatattttatgattcta 440

                                                                       
Query: 241 tgtcatattaatttttacaatgcactgtcttttaggtgacttagcacatttgctagaggg 300
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgtcagattaatttttacaatgcactgtcttttaggtgacttagcacatttgctagaggg 500

                                                                       
Query: 301 ggtctgcatttctaacatattcagcatgttctgctggcaagtatatgtgtatatgtgatg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggtctgcatttctaacatattcagcatgttctgctggcaagtatatgtgtatatgtgatg 560

                                                                       
Query: 361 tgaatatgtgtttatatccaagactaangctgtacatatataattaaacttcttaagaag 420
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 561 tgaatatgtgtttatatccaagactaaggctgtacatatataattaaacttcttaagaag 620

                  
Query: 421 cttaact 427
           |||||||
Sbjct: 621 cttaact 627


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 427
Length of database: 827
Length adjustment: 9
Effective length of query: 418
Effective length of database: 818
Effective search space:   341924
Effective search space used:   341924
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)