BAC Information

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BAC

Clone NameMSMg01-476C23
Chromosome4 (Build37)
Map Location 19,643,655 - 19,643,889
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC667251, LOC435772, Cngb3, LOC623122, Cpne3, LOC100040306, 2410005O16Rik, Wwp1
Downstream geneSlc7a13, Atp6v0d2, LOC667282, Ttpa, LOC667301, EG664800, E130310K16Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-476C23.T7 (MSMg01no476_c23.b1)MSMg01-476C23.TJ (MSMg01no476_c23.g1)
ACCAG557836AG557837
length796788
length of high quality
(start - end)
249 (70 - 318)234 (330 - 563)
definitionCHROMAT_FILE: MSMg01no476_c23.b1 PHD_FILE: MSMg01no476_c23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:55:13 2005CHROMAT_FILE: MSMg01no476_c23.g1 PHD_FILE: MSMg01no476_c23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:55:13 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAATCCGCGGAATTCCT
AGGCAGCATGCAGACTTTGTCAAGCATTCAAAAATCAAATAAAATTACAG
AAGAATACAGGCAAGAAGCTGAGTGACTCAGAAGAATCAGAAGAACCCCA
TAAACAACTACCAAACCCAGACACTAGGCACATGCCAACAAGAGCCTACT
GACAGGAGCCTGATATAGCTGTCTCCTGCGAGGCTCTGCCAGTGCCTGGC
AGATACAGAAGTGAATGCTCACAGTCATCCGTTGGACGGAGCACAAGGTC
CCCAATGAAGGAGCCAGAGAATTTTCAAGGAGCTGAAGGGGACTGAAGTC
CCATAGAAGGAACATTAATATGAACTAACCAGTACCCTCAGAGCTCCATG
GAATATACCACCAATCAAAGAAAACACATGGTGGAACTTGTGGCTCTAGC
TATATTTGTAGTAGAGGGTGGCCTAGTCAGTCATCAATGGGAGGAGAGGC
CTTTGGTCCTGTGAAGGCTGTATGACCCAGTATAGGGGAATGCCAAGACC
TGGAATGGGAGCGAGTGGGTTGGCAAACAGGTGGAAGGTTTAGGCTTCTC
ATCCTTTTTCCTTTTTCCCTTTCCTTTCCATTCCTTCCTCTTTCCTCCCT
TCCTTTCCCTCCTTTTCCTTTTTTTCTTTTTTCCCCCCTCTTTTCTTTCT
CCTTTTTATCCCTACCCACTTCCCCTTTCTCTTATTTTCTACCCCTTCTG
CCCCGCTTATTTCCGCCTCCCTCTCCCTTTTCCCCCCCCCCTTCCT
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXGCAGTAGTGCCATTTGTCTCGAGC
CTGGCCAGATGTTGACACTTCCAGACCTCTAGTCATCAGTGAATAAAGTT
CCAGGCCTCTAAGTTCAAACATCTTTTCCCACATGCCAAGCCTCTGGGGA
TGGTGGCTCATGATCCTGTGGTGTAAATGGTAGCCATAGCTATGTTAAGA
GGGGAGTTTTTCTTAGACAGCAGGCAGGGTTAGAAATGAGGCAATGATTG
ACATACAATGAAATTACAAAGTTTTTTTAAAGCTATGAAATTCAGTGACC
ACCCACAGCTACCAAAGAGGCAACTCTGGGAGGGATACAGAAGCCGCATC
TTGTATGGACTTGGTAGGCAGTTGCCTAAAATGCAAGTTCCTTTGTATAA
ATAATGTGAATTGTCATCACAGGAGTAGAATAAAGCTCAAAATGACTTCC
TTTATTTTTTTTAAGGGAAACTTGATTGCAGATATACAAAAGACAAACGT
TTTGAAAAGTATTTGTAAACCTGGATTACTATAGCGAAGTAGGAAGCACG
AGTGAACAAGTAGGAAGCACGAGTGAACAAGGACATGCTTCACACTTAGT
TTATAAGAAGCTATATACGGTTACATACCTTCCTAAGTTTAAACACCAAT
GCTTCTTCTCCCCTTGTTCCCCTCCTTGCCAATTGTCTATTTTTTACACA
ACCATAGGCACTCTTAAACCTTAACCTATTCAATGTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no476_c23.g1 MSMg01no476_c23.g1 CHROMAT_FILE:
MSMg01no476_c23.g1 PHD_FILE: MSMg01no476_c23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:55:13 2005
         (234 letters)



>mm_chr4_19643455_19644089
          Length = 635

 Score =  431 bits (223), Expect = e-125
 Identities = 232/235 (98%), Gaps = 1/235 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aagctatgaaattcagtgaccacccacagctaccaaagaggcaactctgggagggataca 60
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 aagctatgaaattcagtgatcacccacagctaccaaagaggcaactctgggagggataca 376

                                                                       
Query: 61  gaagccgcatcttgtatggacttggtaggcagttgcctaaaatgcaagttcctttgtata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 gaagccgcatcttgtatggacttggtaggcagttgcctaaaatgcaagttcctttgtata 316

                                                                       
Query: 121 aataatgtgaattgtcatcacaggagtagaataaagctcaaaatgacttcctttattttt 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 315 aataatgtgaattgtcatcacaggagtagaataaagctcaaaatgacttccttttttttt 256

                                                                  
Query: 181 ttt-aagggaaacttgattgcagatatacaaaagacaaacgttttgaaaagtatt 234
           ||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 ttttaagggaaacttgattgcagatatacaaaagacaaacgttttgaaaagtatt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 635
Length adjustment: 9
Effective length of query: 225
Effective length of database: 626
Effective search space:   140850
Effective search space used:   140850
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)