BAC Information

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BAC

Clone NameMSMg01-476L05
Chromosome4 (Build37)
Map Location 92,214,207 - 92,214,451
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC620016, LOC654475, 4930577H14Rik, LOC664886, 1700011H22Rik, LOC68280
Downstream geneLOC620269, LOC384125, Tusc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-476L05.T7 (MSMg01no476_l05.b1)MSMg01-476L05.TJ (MSMg01no476_l05.g1)
ACCAG558229AG558230
length750759
length of high quality
(start - end)
415 (70 - 484)245 (76 - 320)
definitionCHROMAT_FILE: MSMg01no476_l05.b1 PHD_FILE: MSMg01no476_l05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:55:53 2005CHROMAT_FILE: MSMg01no476_l05.g1 PHD_FILE: MSMg01no476_l05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:55:53 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAGAGGATCCGCGG
AATTCTACCAGTTGCTCAAAAAAGACCTAATACCAATATTCCTCAAACTA
TTCTACAAAATAGAAACTGAAGGAAAACTGCCTAATTCATTCTATGAAGC
CACAATTACTCTGACACCTAAACCACACAAGGATGCAATCAAAAAAGAGA
ACTTTAGACCAATCTCACTTATGAATATCAATAAAAAAATACTCAATAAA
ATTTTTGCAAACAGAATCCAAGAACACATCAAAACCATCAATCACCACTA
TCAAGTAGGCCTCATTCCAGGTATTTTTGGTTGGTTCAATATATGAAAAT
CCATTATCATAACCCACTATATAAATAAACTCAAAGAAAAAAATATTGCA
TGATCACCTCCTTAGATGCATAAAAGTATTTGAAAATATAGCAGCGCCCC
TTCATTTTAAAAGTATTGGAGAGATCAGGAATTCCCGATCCATACCTAAA
AAGGAACACTCCTCCATTGCTGGTGGGATCTTAAACTGTTAAAACCACTC
TGTATACCAATCTAGAGGTTCCTTAGAATACCGCCAATAGATTTACCTGA
ACACCTCGCAATTATTACTCCTCACAACATGATTTTTACTGTTCATGAGG
GCAACATGATCTCGTTATTCGGGTGCGCCCATAGCTTTGACTTTTTGCCC
TCCTCCCTATCTCCGCTACTATCTACCTTCCCCACTCCTCTATTCTTTCC

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCTTTCAGCCAGATGGGTACTTACC
TAATTGCAAAACAGATTGTGTCTGTGTCTACAAAGCAAATTGAATTGGAG
ACTTGAACATTAATCTCCAGGCCATATGTGAATGTTGTCCTAAGTAAATA
TGACAATAGCACACAGTCATCACTGCATGCTATTTATATAATGACAGAAG
TCCATCTCTATTGATTCAGATATGCATAACTGGTTTTCGAAGTGGTGTTA
GGTTACTGATGTCAGAGTCATTTTTTACCATGTTAAAGGCACACCCCAGT
CCCCAATTTTTCTTTCAAATTCTACACTATCAGAATTGCTGAAGTAGAAC
TAAAGATCATGTGACATTTTAACAGTCTTCTATACATTCCCATAAACAAT
AAAGGCTGAAAATGAAGTTCCTCATAAAATCTTGTTTCAAGAACAGCTTG
TTATTTATCATTCCTGAATGTAGATGGAAGGTACAAAAGAGATTACAGCC
TCTCCATCTGCATATACACATTACATAGTTCTTAACCACCATAGAGAATA
TAGTAAGCACCTATTAATCTGGGGTTCCCTGCTTTTGCTTTGTCCAGCGT
ACTCTTGATTTGTTTGTCGCCCCTGATTGGTTCGAATCCCCTGGTTCTGT
TACGAATCTAATGCCCGTTTATATGTTTCCCCCATCCCCCCCTCTTTCTT
TGTTTCTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no476_l05.g1 MSMg01no476_l05.g1 CHROMAT_FILE:
MSMg01no476_l05.g1 PHD_FILE: MSMg01no476_l05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:55:53 2005
         (245 letters)



>mm_chr4_92214007_92214651
          Length = 645

 Score =  466 bits (241), Expect = e-136
 Identities = 244/245 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctttcagccagatgggtacttacctaattgcaaaacagattgtgtctgtgtctacaaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tctttcagccagatgggtacttacctaattgcaaaacagattgtgtctgtgtctacaaag 386

                                                                       
Query: 61  caaattgaattggagacttgaacattaatctccaggccatatgtgaatgttgtcctaagt 120
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 caaattcaattggagacttgaacattaatctccaggccatatgtgaatgttgtcctaagt 326

                                                                       
Query: 121 aaatatgacaatagcacacagtcatcactgcatgctatttatataatgacagaagtccat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aaatatgacaatagcacacagtcatcactgcatgctatttatataatgacagaagtccat 266

                                                                       
Query: 181 ctctattgattcagatatgcataactggttttcgaagtggtgttaggttactgatgtcag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ctctattgattcagatatgcataactggttttcgaagtggtgttaggttactgatgtcag 206

                
Query: 241 agtca 245
           |||||
Sbjct: 205 agtca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space:   150096
Effective search space used:   150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)