BAC Information

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BAC

Clone NameMSMg01-476L10
Chromosome4 (Build37)
Map Location 94,916,583 - 95,071,292
singlet/doubletdoublet
Overlap geneLOC100042411
Upstream gene5830433M19Rik, Plaa, LOC667250, Lrrc19, Ift74, Tek, 4930579C15Rik, LOC100039252, Mysm1, LOC100039265, LOC665029, Jun
Downstream gene2310009E04Rik, Hook1, Cyp2j13, LOC242546, LOC546837, Cyp2j11
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-476L10.T7 (MSMg01no476_l10.b1)MSMg01-476L10.TJ (MSMg01no476_l10.g1)
ACCAG558239AG558240
length777741
length of high quality
(start - end)
243 (73 - 315)379 (75 - 453)
definitionCHROMAT_FILE: MSMg01no476_l10.b1 PHD_FILE: MSMg01no476_l10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:55:54 2005CHROMAT_FILE: MSMg01no476_l10.g1 PHD_FILE: MSMg01no476_l10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:55:54 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(94,916,583 - 94,916,825)(95,070,980 - 95,071,292)
sequence
TCAATXXXXXXXXXXXXXXXXXXXXXXXXXATTCAACATAGGATCCGCGG
AATTCACAAATCACTATTCACAGAATTAAAAAGCATAGTTTAGAAACCAA
TGCAAACTCTTTAATCCATGACAATTCAATAAATACCATTTCACTTAAAA
AGAAACCAAACCTTAAAAAAGGCACAATGCTGTTCACATTGCATAGTGTT
TTTAAGATCTTTGTCTGGCATTCTTTTGTCTACAGTGCAGAGACAAAGAA
AAGCTGTACATGCCACGATGCTCTTCTTGGCTTTTCCTTGCCCTCAGCTG
GGGACAAAGAGACATTTTTTTAAACAAAACCTGGGGCATTTTTTTTTAAA
CACAACCTTTTTCTCTTTATTCATTTTCATTCATGAGACCAGCTAAAGGC
TGTTTCTGGCCTGTTTCCCACTGCTTCCTCTTTAGCAGCACAGTTTAGGG
CTCTTTTGCTCCTACCTCTCTAGCCCTGTAGAGGCTCAGTTCCTCACTCA
GACCTTTTCTTTGGAGTCAGACCTGTCTGAGTAGCTAGGGATAGAAATGT
TGCTTGTGACCGCCCCTGCTTCTTGACATTAGAACCCCAGCCCCGCCTAT
CTACCTGGCCAACATCCACTGGTCATAATCCTTCCCTCTTGACTTGCACT
TTTTTCCCTCTATAATTTTTCCGCTTCCCAATCTCAGCCCACTTCTTTCT
CCCTCATTTTATATCCCCCCCCTTTCTCCGTTTATATCCACCCCCTTTTT
CTTCCCCCTCTCCCTCCCCTATCCAAN
NACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCAACCTCTCTTTCCATCACATTTTCT
TCTTAGCCATCCCCTGGCTTTTCAGAGTGGAGCCACAGTGGGGATTCAGT
AAGGGGAGTACACTGACCTGCTTCCCAGCTCCACTAACACCCCACTCCTC
TGCCCATGCATCTTGGCTTCCATCCTTTCCATGTTGACAGCAGAGTCTAA
GCCAAGCTCTCCGTGTTCCCATCCTAATGTGACCTCTACCTACTCCTTAC
AAAGCACAGTGTTTGTATTTGTCCTTCATGCTTCTGGGCTCTTGCTGACA
GTGCCACTTGAGTGTTATTCTTTTTAGTGATGTTGCCTACGCACACACTG
TTCAGTGAAACTTCCCCTCTGGATCTATCCATGTAAATGTCAGCTTGCTT
TCCCAGATGCACACACTGCCTAACCCTAATCCAGTTCCCAGTTCACTGAG
GCATGAATAGCTCGCATAATGTGCCAAGTATAGCAACCGTTTCTATTTCG
CTGTCCCCTATTGCTCCCCTTTCCCATACGCCCTCCTCTTGCCTCTGTTT
CACTTGCCCCTTTTCCCCCTATTTTTTGTTTCCCCCTCACTCCTTTATTT
TTTTTCATTCCCTTCCTCCCCTTTATCCTATCTCTCCCCCCTTTTTTCCT
CTTTCTCTTCTCTTTCCCCCCCCCTTTTTTTGCCCCCCCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no476_l10.b1 MSMg01no476_l10.b1 CHROMAT_FILE:
MSMg01no476_l10.b1 PHD_FILE: MSMg01no476_l10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:55:54 2005
         (243 letters)



>mm_chr4_94916383_94917025
          Length = 643

 Score =  462 bits (239), Expect = e-135
 Identities = 242/243 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gaattaaaaagcatagtttagaaaccaatgcaaactctttaatccatgacaattcaataa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gaattaaaaagcatagtttagaaaccaatgcaaactctttaatccatgacaattcaataa 260

                                                                       
Query: 61  ataccatttcacttaaaaagaaaccaaaccttaaaaaaggcacaatgctgttcacattgc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ataccatttcacttaaaaagaaaccaaaccttaaaaaaggcacaatgctgttcacattgc 320

                                                                       
Query: 121 atagtgtttttaagatctttgtctggcattcttttgtctacagtgcagagacaaagaaaa 180
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atagtgtttttgagatctttgtctggcattcttttgtctacagtgcagagacaaagaaaa 380

                                                                       
Query: 181 gctgtacatgccacgatgctcttcttggcttttccttgccctcagctggggacaaagaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gctgtacatgccacgatgctcttcttggcttttccttgccctcagctggggacaaagaga 440

              
Query: 241 cat 243
           |||
Sbjct: 441 cat 443


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 243
Length of database: 643
Length adjustment: 9
Effective length of query: 234
Effective length of database: 634
Effective search space:   148356
Effective search space used:   148356
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no476_l10.g1 MSMg01no476_l10.g1 CHROMAT_FILE:
MSMg01no476_l10.g1 PHD_FILE: MSMg01no476_l10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:55:54 2005
         (379 letters)



>mm_chr4_95070714_95071492
          Length = 779

 Score =  574 bits (297), Expect = e-168
 Identities = 309/313 (98%)
 Strand = Plus / Minus

                                                                       
Query: 67  gggattcagtaaggggagtacactgacctgcttcccagctccactaacaccccactcctc 126
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 gggattcagtaaggggagtacactgacctgcttcccagctccactaacaccccactcctc 520

                                                                       
Query: 127 tgcccatgcatcttggcttccatcctttccatgttgacagcagagtctaagccaagctct 186
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 tgcccatgcatcttggcttccatcctttccatgttgacagcagagtctaagccaagctct 460

                                                                       
Query: 187 ccgtgttcccatcctaatgtgacctctacctactccttacaaagcacagtgtttgtattt 246
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  
Sbjct: 459 ccgtgttcccatcctaatgtgacctctacctactccttacaaagcacagtgtttgtatca 400

                                                                       
Query: 247 gtccttcatgcttctgggctcttgctgacagtgccacttgagtgttattctttttagtga 306
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 gtccttcatgcttctgggctcttgctgacagtgccacttgagtgttattctttttagtga 340

                                                                       
Query: 307 tgttgcctacgcacacactgttcagtgaaacttcccctctggatctatccatgtaaatgt 366
           ||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 339 tgttgtctacgcacacactgttcagtgaaacttcccccctggatctatccatgtaaatgt 280

                        
Query: 367 cagcttgctttcc 379
           |||||||||||||
Sbjct: 279 cagcttgctttcc 267


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 379
Length of database: 779
Length adjustment: 9
Effective length of query: 370
Effective length of database: 770
Effective search space:   284900
Effective search space used:   284900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)