BAC Information

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BAC

Clone NameMSMg01-476N02
Chromosome4 (Build37)
Map Location 18,844,568 - 18,844,951
singlet/doubletsinglet
Overlap geneLOC435772
Upstream geneMmp16, LOC667251
Downstream geneCngb3, LOC623122, Cpne3, LOC100040306, 2410005O16Rik, Wwp1, Slc7a13, Atp6v0d2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-476N02.T7 (MSMg01no476_n02.b1)MSMg01-476N02.TJ (MSMg01no476_n02.g1)
ACCAG558318AG558319
length758762
length of high quality
(start - end)
538 (47 - 584)514 (77 - 590)
definitionCHROMAT_FILE: MSMg01no476_n02.b1 PHD_FILE: MSMg01no476_n02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:56:03 2005CHROMAT_FILE: MSMg01no476_n02.g1 PHD_FILE: MSMg01no476_n02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:56:03 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCACCATGGATGCAGTGTGATACCATGTGGCAAAGAGTCTCTGCTC
TGGAGATCCATAGATAGATAGTAAGAGAGAGAAAGGAGGGACGAAAACAA
ACTGAGTTAACATATCACACGAATATTAAACCCTGAAGAGGGGCTGGAGC
AGTTAATAGGGCAAAGGGTCTTAGTTACTATGGTATTTTGAATACATTTG
GTCCCCATAGACTAATATATTTGAATGCTTAGTTACCAGGGAGAAGAACT
ATTTGAAAGAATTAAAAGGATTAGAAGACATAGTCTTGTTGGAGTAGGAA
TGATCTTGTTTGAGAAAGTATATCACTGGGTAGTGGACCTTTAGGTTTCA
AAAGCCAATGCCAGGCCTAGTCCTTCTCTCTCTCTCTGCCTAGGGCATAG
CATGTAGCTCTCAACTATTTTTCAGAACCATACTTGCCAGCTGCTATGTT
CCCTGTGATTCTGATAATGGACTAATCCTCTGAAATTGTAAGCAAGCCCT
TACTTAAGTGCTTTTTCTCATAAGAGCTGCTGTGATCATGGTGTCTCTTC
NCAGCAATAGAACCGTAATTAAGACAGTATTATCACTGTGGAAAAACACT
ATGATCTACAAACTCCTTCTAGAAAATATTTAAGTTGGGGGCTTGTTTAT
ATTTTCAGAGCATATTTTCCCATCAAGGATTGAAATCGGCTCGACTTGTG
TTCAATTA
NCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAACAAAATTGTCCAAGAACTAAAA
ATGGAAATAGAAACAATAAAGAAAACACAAACTAACGCAACCCTGAGATG
GGTTACCTAGAAAAGAGAACAGGAATTATAAATGCAAGCCTCACCAACAG
AAGATAAGAGATGAACAAGATAATCTCAGGCATAGAAAATACCATAGAAG
AAAACACTATATCAGTCAAAAACAATACCAAATGTAAAAAGTATCTAACT
CCAAAAATTCAGGAAATTTGGGACACTACGAAAAGACCAAACCAAAGAAT
AATAGTAATAGAAGAGACTGAAGATACCCCGTTCAAAGGACTAAAATATA
TCTTCAACAAAAACAGAAGAGAACTTTTTTAACCTACGGAAAGATGGCTA
TAAATGTACAAGAAGCTAACAGAACAACAGGTAGATTGGACTAGAAAAAA
ATGCTCCAACTATATAATAATAAAACATTATACAGATCAAAAAATAATAG
CAGATGCAAAGGAAAAAGGCCAAGAAACATATAAATGCAGACCTATCAGA
AATAGACTACTTCTTAAGGAGATTCTAANAACCCAGAAGATCCTGGACAG
ATGTTTGCAGACCTTAAGAGACCACAGATGCCAGCCCATACAACAGTATC
TAGCAAAACTTTCCTTCACATAGATGGAAAAACAGTATACTCCCTGACGA
AACCAAATTTAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no476_n02.b1 MSMg01no476_n02.b1 CHROMAT_FILE:
MSMg01no476_n02.b1 PHD_FILE: MSMg01no476_n02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:56:03 2005
         (538 letters)



>mm_chr4_18844568_18845507
          Length = 940

 Score =  692 bits (358), Expect = 0.0
 Identities = 377/384 (98%), Gaps = 2/384 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaccatggatgcagtgtgataccatgtggcaaagagtctctgctctggagatcca 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gaattcaccatggatgcagtgtgataccatgtggcaaagagtctctgctctggagatcca 325

                                                                       
Query: 65  tagatagatagtaagagagagaaaggagggacgaaa--acaaactgagttaacatatcac 122
           ||||||||||||||||||||||||||||||||||||  |||||| |||||||||||||||
Sbjct: 324 tagatagatagtaagagagagaaaggagggacgaaaacacaaacagagttaacatatcac 265

                                                                       
Query: 123 acgaatattaaaccctgaagaggggctggagcagttaatagggcaaagggtcttagttac 182
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 acgaatattaaatcctgaagaggggctggagcagttaatagggcaaagggtcttagttac 205

                                                                       
Query: 183 tatggtattttgaatacatttggtccccatagactaatatatttgaatgcttagttacca 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 204 tatggtattttgaatacatttggtccccatagactaatatatttgaatgcttagtcacca 145

                                                                       
Query: 243 gggagaagaactatttgaaagaattaaaaggattagaagacatagtcttgttggagtagg 302
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144 gggagaagaaccatttgaaagaattaaaaggattagaagacatagtcttgttggagtagg 85

                                                                       
Query: 303 aatgatcttgtttgagaaagtatatcactgggtagtggacctttaggtttcaaaagccaa 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84  aatgatcttgtttgagaaagtatatcactgggtagtggacctttaggtttcaaaagccaa 25

                                   
Query: 363 tgccaggcctagtccttctctctc 386
            |||||||||||||||||||||||
Sbjct: 24  agccaggcctagtccttctctctc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 538
Length of database: 940
Length adjustment: 10
Effective length of query: 528
Effective length of database: 930
Effective search space:   491040
Effective search space used:   491040
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)