BAC Information

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BAC

Clone NameMSMg01-476N03
Chromosome4 (Build37)
Map Location 27,470,527 - 27,471,005
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC100040691, Tpm3-rs2, LOC100040842, LOC100040735, LOC230044, LOC665141
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-476N03.T7 (MSMg01no476_n03.b1)MSMg01-476N03.TJ (MSMg01no476_n03.g1)
ACCAG558320AG558321
length751750
length of high quality
(start - end)
458 (71 - 528)479 (78 - 556)
definitionCHROMAT_FILE: MSMg01no476_n03.b1 PHD_FILE: MSMg01no476_n03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:56:03 2005CHROMAT_FILE: MSMg01no476_n03.g1 PHD_FILE: MSMg01no476_n03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:56:03 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGCATCCGCG
GAATTCTGCACTATCTCCACCTGGCCCTGGGAGTTTTTTGGCTTCTAGGT
TTTTAATGACTTCTGTTTCCTTATGGGATATAAGCCTGTTTAGATAGTTT
ACCTGTTCTTGGTTTAACTTTGGTATGTAGCATCTGTCTAAAAGTCCATC
CATTTCATCTAGATTTTCCAGTTTTGTTGAGTATAGGCTTTTGTAGTAGG
ATCTGATAATTTTTTTGCATTTCCTCCATGTCTTTTGTTATGTCTGACTT
TCATTTATGATTTTGTTAATTTGTATGCTGCCACTTGGCCCTTTAGTTAG
TTTGACTAGGGGTTTATCTATCTTGTTGATTCTCTCAGATAACCAGCTTT
TTTTTTTCTTTTTCTTCCTTTTTTTTTTCCATTTTTATTGTTTTCTGTTT
CTATTTGGTTGACTTTGGCCCTGAGACTGACTATTTCCTGCCTTCAATTC
CTCTTGGGTAAATTTGCTTCTTTTCATTCTAGAGCTCTCAGGTTGTGCTG
ACAGCTGAGCCACTTTGTTATTGTACACCTCCCCCCTTGTTCTTCCCTTC
GTTTTTTTGCTTCCCTGTTCCCTCCGCCTTCTTTTATCTTTCTTTCCCTT
CTCTCTCATCTCCTTCTCTCATCCCTCCCTCTCCTTTTTCTTTTTCCCCT
CCCTCCCTTTCTCCTCTTCTCCTTCTCTCCCCTCCTCCTCTTTCCTCTTC
G
NCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCATGAATCAGGGATGGCTGACAA
CAGGACAGTTGCACAGATGAAATCATTATATTGTGTCATCACACACATCA
ACTATGTAAGCTCAATACAAATAATGTCCCAGCACTGAAAATAGAAATGG
GAAGGAAGTCCTACCTGATGAGCTAATGAGAGTTAAGGACTTCTGGCAGA
GGTACTATCAATTCCATTTAAGGATAAAGACATTGGGTGATTACTGATTT
TCCAACAGATAACCACACATATGTGGCCCCTCAGATGGCAATGGTTACCT
ACTTGAAGCACTTAACACCAAAACTGGTGTGACGATTGTAATCCCAAATA
ATGGCAAAGGCCTTGAACCTGGTCCACTGGCCAGCCAGAGTCTGCTTTGG
CACAGTCATGATCTTCAGAATCTAATCTTTAAAGTCAATGTTCCTTAATG
GACTGAGAGTTCAGGTAGATCTCCTCCAAGGACTTGATTTTTATATCCTT
AACCAGGTGGCCCAGGTTGGTGATAGAGACCCACTCCTTGTTTTCAGCTT
CACCTCCATGATCTCTGTGGNCTCAGGGACAGTTATGGCATCTAACATGA
CCCTGACCCCTAAATTTTGGTGCTGAACCCTCCTGGAACCTTCTGAATCC
TCCAATCCCGAGCCTCCTGTTCCTCGGGCCCCCCCGGTGGCACTTAATGG

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no476_n03.g1 MSMg01no476_n03.g1 CHROMAT_FILE:
MSMg01no476_n03.g1 PHD_FILE: MSMg01no476_n03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:56:03 2005
         (479 letters)



>mm_chr4_27470327_27471205
          Length = 879

 Score =  888 bits (459), Expect = 0.0
 Identities = 474/479 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   catgaatcagggatggctgacaacaggacagttgcacagatgaaatcattatattgtgtc 60
           |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct: 679 catgaatcagggatggctgacaacaggacagttgcacagatgaattcattatagtgtgtc 620

                                                                       
Query: 61  atcacacacatcaactatgtaagctcaatacaaataatgtcccagcactgaaaatagaaa 120
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 atcccacacatcaactatgtaagctcaatacaaataatgtcccagcactgaaaatagaaa 560

                                                                       
Query: 121 tgggaaggaagtcctacctgatgagctaatgagagttaaggacttctggcagaggtacta 180
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 559 tgggaaggaagtcctacctgatgagctaatgagagttaaggactgctggcagaggtacta 500

                                                                       
Query: 181 tcaattccatttaaggataaagacattgggtgattactgattttccaacagataaccaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 tcaattccatttaaggataaagacattgggtgattactgattttccaacagataaccaca 440

                                                                       
Query: 241 catatgtggcccctcagatggcaatggttacctacttgaagcacttaacaccaaaactgg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 catatgtggcccctcagatggcaatggttacctacttgaagcacttaacaccaaaactgg 380

                                                                       
Query: 301 tgtgacgattgtaatcccaaataatggcaaaggccttgaacctggtccactggccagcca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 tgtgacgattgtaatcccaaataatggcaaaggccttgaacctggtccactggccagcca 320

                                                                       
Query: 361 gagtctgctttggcacagtcatgatcttcagaatctaatctttaaagtcaatgttcctta 420
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 319 gagtctgctttggcacagtcatgatcttcagaatctcatctttaaagtcaatgttcctta 260

                                                                      
Query: 421 atggactgagagttcaggtagatctcctccaaggacttgatttttatatccttaaccag 479
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 atggactgagagttcaggtagatctcctccaaggacttgatttttatatccttaaccag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 479
Length of database: 879
Length adjustment: 10
Effective length of query: 469
Effective length of database: 869
Effective search space:   407561
Effective search space used:   407561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)