BAC Information

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BAC

Clone NameMSMg01-476O11
Chromosome4 (Build37)
Map Location 25,917,575 - 25,917,875
singlet/doubletsinglet
Overlap genenone
Upstream geneGpr63, Fhl5, 1810074P20Rik, Prdx6-rs2, LOC665019, LOC625732, Fut9, LOC100040780, Hn1-ps1
Downstream geneManea, Bhmt-ps1, LOC665079, Gng2-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-476O11.T7 (MSMg01no476_o11.b1)MSMg01-476O11.TJ (MSMg01no476_o11.g1)
ACCAG558383AG558384
length753747
length of high quality
(start - end)
234 (322 - 555)301 (326 - 626)
definitionCHROMAT_FILE: MSMg01no476_o11.b1 PHD_FILE: MSMg01no476_o11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:56:10 2005CHROMAT_FILE: MSMg01no476_o11.g1 PHD_FILE: MSMg01no476_o11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:56:10 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXAATTCAAATAGGATCCGCGNGA
ATTCATTCTTACAAATTGTATTCCATTGATCTCCTTTTTTGTTCTCTAAT
TGCTATAGCTAGAACTTCAAATACTACATTGAATAGGTAAGGAGAGGGTG
GGTAGCCTTGTCTTGTCCCTGATATTAGTGGGATTGCTTCATGTTTCTCT
CCATTTAGTTTGATGTTGGCTATTGGTTTGTTATATATTGCTTTTATTAT
ATTTAAGTATGTGCATTGAATTCCTGATCTTTCCAAGACTTTTAACATGA
AGGGGATTGAACTTTGTAATTGGTTTTTAAATATATTAAGATGATCATGT
GGATTTTTTTCTTTGTTTATATAGTGGATTACATTGGTGGATTTCCATAT
ATTGAATGATACCTGCATCCCTGGGATGAAGCCTAATTGATAATGGAGAA
TGATAGTTTTGATGTGGTCTTCGATTCAGCTTGCAAGTATTTTATTGAGT
ATATTAGCATCGATATTCATAAGGGAAATTGCTATGACGTTCCCTTTCTT
TCTTGGTTCTTTGTGTGATTGAGTATGATAGTTATCGTTCGCATACAATA
CTGACTTACTGAATTTGGCAATTCCTTTGATAAAATTCATTCCTTATTTT
TTATTGTCTTTTCCTCCCCTGTTATTCCCATCATCCGTTCCTTGTACTTT
AATCTATCCTCGATCTCTTTTTTTCTTTCCTCTTCGCTTTTCAGACATCT
TTT
CATGATAGTGGGTAGCCTGGGGGNCGCCGGGTCANTATTAGGGAGGNGAN
ACNANAGAAGTACTAAAACACATTCAGGACAGCCGGGGCTATACAGAGAA
ACCCTGCCTTGAAATCCACACCCCCCCCAAAAGAGAATACTCAGATACTC
AGTACTCTATTTAATAATTAAAATATATTGCCAGTGTGTGACATATTTGT
CATCCATGACACTGAAGTAGAAATAAAGGTGTGCCTAATCTGGGGTAGGT
GTTAGTATATATAGTTTTGAAAACCTGATTCTCTTGTCAATACTACATGA
ATGAAGAAATTGAATCTAATAGTTATTATTATTTCAGATTACAAACAGCC
TTAATCCAGAAACACTAAGGTTTTTATTCTTAATGCTAACCTTCTCCCTG
ACATCCTCTGCAGACTTCAGAGAGTAAACTGCATCTAGCCAAAGTTGTCA
CAGTGCTGAAATAGTAAGACCCAGGAAAGAACAATCACTGTTCAAAGTAC
AATTTATATATTTTAGTCAAGATTTGGTGGGACTAGCTCAGAGAGCAGAC
CAAGAAATTGTTGTTCCAAAGTTCATAGAGGATCTTGACTTTACTTTCTA
ATAATTTATTTTACAATGTTAAGTGGAACATTTATCTATAATCCAACTTG
TTTTTTTTTGCATTTTGCCTGCTATTCATTAGAGATTATTTACTATTATA
AGGTAATAAAACATAATGTAGCTGAATTTGAACCCATATCTTTCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no476_o11.g1 MSMg01no476_o11.g1 CHROMAT_FILE:
MSMg01no476_o11.g1 PHD_FILE: MSMg01no476_o11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:56:10 2005
         (301 letters)



>mm_chr4_25917375_25918075
          Length = 701

 Score =  574 bits (297), Expect = e-168
 Identities = 300/301 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttattatttcagattacaaacagccttaatccagaaacactaaggtttttattcttaatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttattatttcagattacaaacagccttaatccagaaacactaaggtttttattcttaatg 260

                                                                       
Query: 61  ctaaccttctccctgacatcctctgcagacttcagagagtaaactgcatctagccaaagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctaaccttctccctgacatcctctgcagacttcagagagtaaactgcatctagccaaagt 320

                                                                       
Query: 121 tgtcacagtgctgaaatagtaagacccaggaaagaacaatcactgttcaaagtacaattt 180
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 321 tgtcacagtgctgaaatagtaagacccaggaaagaacgatcactgttcaaagtacaattt 380

                                                                       
Query: 181 atatattttagtcaagatttggtgggactagctcagagagcagaccaagaaattgttgtt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atatattttagtcaagatttggtgggactagctcagagagcagaccaagaaattgttgtt 440

                                                                       
Query: 241 ccaaagttcatagaggatcttgactttactttctaataatttattttacaatgttaagtg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccaaagttcatagaggatcttgactttactttctaataatttattttacaatgttaagtg 500

            
Query: 301 g 301
           |
Sbjct: 501 g 501


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 301
Length of database: 701
Length adjustment: 9
Effective length of query: 292
Effective length of database: 692
Effective search space:   202064
Effective search space used:   202064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)