BAC Information

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BAC

Clone NameMSMg01-477A08
Chromosome4 (Build37)
Map Location 52,784,426 - 52,784,869
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC384015, LOC100041026, LOC100041038, LOC666724, Smc2, LOC100040883, 4930547C10Rik, LOC100040908
Downstream geneLOC666761, Olfr275, Olfr274-ps1, Olfr273, LOC230185, Olfr272, Olfr271-ps1, Olfr270, 1700054F22Rik, Nipsnap3a, Abca1, 4930522O17Rik, AI427809, LOC100041197, Slc44a1, Fsd1l, LOC666483, Fcmd
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-477A08.T7 (MSMg01no477_a08.b1)MSMg01-477A08.TJ (MSMg01no477_a08.g1)
ACCAG558473AG558474
length720742
length of high quality
(start - end)		619 (39 - 657)652 (83 - 734)
definitionCHROMAT_FILE: MSMg01no477_a08.b1 PHD_FILE: MSMg01no477_a08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:56:19 2005CHROMAT_FILE: MSMg01no477_a08.g1 PHD_FILE: MSMg01no477_a08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:56:20 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ACACCTAATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGGATCCG
CGGAATTCCTCTCATTCTCCAGTTCTGACCACGTCAGTAAAGGAACCATG
TTCTTCTACGAAGTCCTGTGTCTGTCTCTAGTTTTGTAAGGTGTTGGTCA
ATGAACCTTCAGTTCTGACGAAATCATACGTTTCTGAGAATGGAACCCTG
CCTTCTATCAGCCAATATCACATCAAAGTTCTTTTTTTGTATCATTGGCT
CTACCAGAAGGCAAAGGTTTATCTTTTTAAAAATTTTTATTGGCTATTTT
ATTTATTTACTTTTCAAATATTATCCCCCTTCTGGGTTTTCCCTCCACAA
CCCCCCTATCCCTTCCTTCCTCCCCTGCCTTGATGAGGGCACTCCTGCCT
CACCACTCTAGCGTTTCCCTATGCTGGGGCATCAAGCCTTCACAGGACCA
AGGGCCTCCCCTCTCACTGATGCTGGCAGTCCTCTGCTACATATGCAGCT
GGAGCCATGGGTCCCTCCATGTGTATTCTTTGTTTGGTGGTTTAGTCCCT
AGGAGCTCTGTGGGGTCTAGTTTGTTGATATTATTGTTCTTCCTATAGGG
TTGCAAACCACTTCATTTTCTTCAGTCCTTCCCCTAACTCCTTGATTGTG
AGACAAAGGTTTCTTTAATGTTTTACTGTTTTGAGTAAATGACTTAGTAT
GTAACTAAACTATTTGGAAG

NNNNCTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGTTTCAAGCATTTTATT
GAGTATTTTTGTATTAATGTTCATGAGTAAAATTGGTCTGTAATTTTCTT
TTACTATTGAATCTTTTTGTGTTTTGGGTATCAGGGTAACTATGACCTCA
TAAAATGAATTTGATAATTTTCATTCTGTTTCTATTTTGTGGAATAATTT
GAGGAAAGCTATATTAGCTCTTCTTTGAAAATCTGATAGAATTCTGGGCT
AAAAACATCTGGCATTGGGCTTTTGTGGTTAGGAGACTTCTGATGGTTGT
TTCTATTTTCTTAGAGGTTATAGGTCTGTTCACATTGTTTATCAGATCTC
TATTTAACTTTGGTAAGTGGTATCTATCAAGAAAATTGCCCATTTCTTTT
GGGATTTCCAGTTTTTGTAAAGCACAGGGTTTTTTGATGTATGCTCTAAT
AAGAGAGTCTGTTGCTATATTTCATTTCCAATTTTGTTAATTTGGATATT
CTCTATCTTTCATTAGTTTAGATAAAAGCTTGTTTATCTTGCTGATTTTT
TTCAAAGAACTAACTCTTGATTCTTTTTTTTTTTTGTATTTCTCTCCTTT
TTTAAAATTTTACTGATTTTAGCCCTCAGTTTGATTATTTCTTGCCTTTT
ACTCCTCTTGGGTAAACTTTCTTCTTTTTGTTCTAGAGCTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no477_a08.b1 MSMg01no477_a08.b1 CHROMAT_FILE:
MSMg01no477_a08.b1 PHD_FILE: MSMg01no477_a08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:56:19 2005
         (619 letters)



>mm_chr4_52784426_52785443
          Length = 1018

 Score =  822 bits (425), Expect = 0.0
 Identities = 440/445 (98%), Gaps = 1/445 (0%)
 Strand = Plus / Minus

                                                                       
Query: 15  gaattcctctcattctccagttctgaccacgtcagtaaaggaaccatgttcttctacgaa 74
           ||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 444 gaattcctctccttctccagttctggccacgtcagtaaaggaaccatgttcttctacgaa 385

                                                                       
Query: 75  gtcctgtgtctgtctctagttttgtaaggtgttggtcaatgaaccttcagttctgacgaa 134
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gtcctgtgtctgtctctagttttgtaaggtgttggtcaatgaaccttcagttctgacgaa 325

                                                                       
Query: 135 atcatacgtttctgagaatggaaccctgccttctatcagccaatatcacatcaaagttct 194
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 324 atcatacgtttctgagaatggaaccctgccttctatcagccaatatcacatcaaagttc- 266

                                                                       
Query: 195 ttttttgtatcattggctctaccagaaggcaaaggtttatctttttaaaaatttttattg 254
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ttttttgtatcattggctctaccagaaggcaaaggtttatctttttaaaaatttttattg 206

                                                                       
Query: 255 gctattttatttatttacttttcaaatattatcccccttctgggttttccctccacaacc 314
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gctattttatttatttacttttcaaatattatcccccttctgggttttccctccacaacc 146

                                                                       
Query: 315 cccctatcccttccttcctcccctgccttgatgagggcactcctgcctcaccactctagc 374
           ||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 145 cccctatcccttcctccctcccctgcctcgatgagggcactcctgcctcaccactctagc 86

                                                                       
Query: 375 gtttccctatgctggggcatcaagccttcacaggaccaagggcctcccctctcactgatg 434
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 85  gtttccctatgctggggcatcaagccttcacaggaccaagggcctcccctctcactgatg 26

                                    
Query: 435 ctggcagtcctctgctacatatgca 459
           |||||||||||||||||||||||||
Sbjct: 25  ctggcagtcctctgctacatatgca 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 619
Length of database: 1018
Length adjustment: 10
Effective length of query: 609
Effective length of database: 1008
Effective search space:   613872
Effective search space used:   613872
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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