BAC Information

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BAC

Clone NameMSMg01-477A17
Chromosome4 (Build37)
Map Location 108,434,039 - 108,434,625
singlet/doubletsinglet
Overlap genenone
Upstream gene4933424M12Rik, 4930430J20Rik, Magoh, 0610037L13Rik, Cpt2, Slc1a7, Podn, Scp2, Echdc2, Zyg11a, Zyg11b, LOC100040252, 2010305A19Rik, LOC545667, Gpx7, LOC665728, Zcchc11, LOC100040110, Prpf38a, Orc1l, Cc2d1b, Zfyve9, LOC100040326
Downstream gene3110021N24Rik, Btf3l4, Txndc12, Kti12, Rab3b, Nrd1, Osbpl9, Calr4, Eps15, LOC666144, 4922503N01Rik, Rnf11, 4930522H14Rik, Cdkn2c, LOC100040307, Faf1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-477A17.T7 (MSMg01no477_a17.b1)MSMg01-477A17.TJ (MSMg01no477_a17.g1)
ACCAG558490AG558491
length751770
length of high quality
(start - end)
512 (76 - 587)581 (75 - 655)
definitionCHROMAT_FILE: MSMg01no477_a17.b1 PHD_FILE: MSMg01no477_a17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:56:21 2005CHROMAT_FILE: MSMg01no477_a17.g1 PHD_FILE: MSMg01no477_a17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:56:21 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CGTTTTAATCGGCGGGGCTAAACAACTCACTATTTTTCGAGGATCCGCGG
AATTCATTATTATATTCCAGTTAATTAATTAAAAACAGTGTCATATTCTA
AAGACAGCATTCTGCCTCAGTCTGCCCCTTCCTCGATACACAGGTCCCGT
CCAACAGTTCCTGAATCTCAGCCCATTTGCCAGTTACAAGTCTTTGCAGT
TCCCACTACTCATTGCAAAATAAAGCTTCTCTGGCCAAAGCTAATGGTGG
CAGTAATCTATGGGTATGAACATAAATACTTGGGCAGCAATATGGTAGGC
ACATCTTGTCCATTTGCAAAATAGCACTAGGGCCTAGGACATCACTGGCT
ACAGGCTTTTAACCAGGCTTGCAGAATCAAATATGGACTCCCTCCTGCGA
AATGAGGCTCTGATCTGACCAAAGAGGTTGCCCCTTGTGACTGGCTTGCT
ACCATTGCACCAGGGGAAACTTCTTTAGGAAAGCTGGTGGGTGGTGCTGA
GCACAGATCCGCACTTGATGGTAATTCTCACCCAGAAGCCTGGCACTCTG
ACTTGAGAGCCAGCTGTCAGGAAAGAAACTTCCCTCTTGGTTCCAACTTG
ATCTTTAAGTCTTGTGAGCGAGGCATAAAGCGAACAAAAGGGTCTAATTC
TGATGAGTGACCAATGGCAAATGCCTGTATTGTTTGAAACTTTTCCTTTT
TTTTTTTTTTTTTTTGGGTTTTCAAGAACCGGTTTTTCCGCATAAGCCTT
G
NCCAATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCTGACTGGTGTTAAGAATGAAAAGT
GTTAGTTACAGAAACAATGGAATGAGCTTAGCTATTCTGTTGCAGGGACT
CCCCAGAGAGAGCCACTAACAAATGACTTAAAACTAAGGACTGTTTGGTA
GCACATCCCTATCACTACAGTGGGAAAACAGTAAAACACAGAGTGAACCC
TTGGCAGTGAAGACCATTGTTTGAAAAATAACTAAATGTTAACCACGGAC
AAATATGTTATGTGAAGGTCATTTTCTTAGCTTAGAACACCAGAAGCCTG
AAAGATGGAATAGATACACCTAAGACAGTGACCCTTGAGGACAGTCATTC
TTCTTTGAACCCGACAAATCTACAGTAATGAGTTAGCACTCCCCGTAGTG
ACTAAACTTCACAGAGGAGAGGGTAGGGGGTCATTGAACCTTCACCTGAG
AATCCATTAACTCCTGCCTATGCCTCCCAGCAACATGCAAATAATTCTAA
AGTTAAGGTGTATGTTGCCCCATGGTCTCAGGAGGTACTAGAGTACACAG
AGTATAAAAGCAGTAGAACTCTACACAGCTATGCAACAGTCATCATCCAT
GCTGAGGTGAGACCTTCAGGTAACCTCAGGGGTCACTCATGCTCTATAAG
TAAGTCAAATAAACTCAATGGCTCAGCACATTAAGACCGGTTTGTCACTG
GGATTTTAAAGGAAGTAGCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no477_a17.g1 MSMg01no477_a17.g1 CHROMAT_FILE:
MSMg01no477_a17.g1 PHD_FILE: MSMg01no477_a17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:56:21 2005
         (581 letters)



>mm_chr4_108433839_108434825
          Length = 987

 Score = 1046 bits (541), Expect = 0.0
 Identities = 573/591 (96%), Gaps = 14/591 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctgactggtgttaagaatgaaaagtgttagttacagaaacaatggaatgagcttagcta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctgactggtgttaagaatgaaaagtgttagttacagaaacaatggaatgagcttagcta 260

                                                                       
Query: 61  ttctgttgcagggactccccagagagagccactaacaaatgacttaaaactaaggactgt 120
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttctgttgcagtgactccccagagagagccactaacaaatgacttaaaactaaggactgt 320

                                                                       
Query: 121 ttggtagcaca------tccctatcactacagtgggaaaacagtaaaacacagagtgaac 174
           |||||||||||      |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttggtagcacacaaagatccctatcactacagtgggaaaacagtaaaacacagagtgaac 380

                                                                       
Query: 175 ccttggcagtgaagaccattgtttgaaaaataactaaatgttaaccacggacaaatatgt 234
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccttggcagtgaagaccattgtttgaaaaataactaaatgttaaccacggacaaatatgt 440

                                                                       
Query: 235 tatgtgaaggtcatttt----cttagcttagaacaccagaagcctgaaagatggaataga 290
           |||||||||||||        |||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tatgtgaaggtca----ggaccttagcttagaacaccagaagcctgaaagatggaataga 496

                                                                       
Query: 291 tacacctaagacagtgacccttgaggacagtcattcttctttgaacccgacaaatctaca 350
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 tacacctaagacagtgacccttgaggacagtcattcttctttgaacccgacaaatctaca 556

                                                                       
Query: 351 gtaatgagttagcactccccgtagtgactaaacttcacagaggagagggtagggggtcat 410
           |||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||
Sbjct: 557 gtaatgagttagcactccccatagtgactaaacttcatagaggagagggtagggggtcat 616

                                                                       
Query: 411 tgaaccttcacctgagaatccattaactcctgcctatgcctcccagcaacatgcaaataa 470
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 tgaaccttcacctgagaatccattaactcctgcctatgcctcccagcaacatgcaaataa 676

                                                                       
Query: 471 ttctaaagttaaggtgtatgttgccccatggtctcaggaggtactagagtacacagagta 530
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 ttctaaagttaaggtgtatgttgccccatggtctcaggaggtactagagtacacagagta 736

                                                              
Query: 531 taaaagcagtagaactctacacagctatgcaacagtcatcatccatgctga 581
           |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 737 taaaagcagtagaattctacacagctatgcaacagtcatcatccatgctga 787


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 581
Length of database: 987
Length adjustment: 10
Effective length of query: 571
Effective length of database: 977
Effective search space:   557867
Effective search space used:   557867
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)